BAC Information

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BAC

Clone NameMSMg01-443G11
Chromosome11 (Build37)
Map Location 63,203,520 - 63,203,754
singlet/doubletsinglet
Overlap genenone
Upstream geneNcor1, Pigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b, Cdrt4, Tekt3, Pmp22, LOC433423, LOC100042799
Downstream geneLOC100041690, LOC654442, LOC668297, Hs3st3b1, Cox10, 2810001G20Rik, EG544785
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443G11.T7 (MSMg01no443_g11.b1)MSMg01-443G11.TJ (MSMg01no443_g11.g1)
ACCAG532818AG532819
length741727
length of high quality
(start - end)
241 (81 - 321)64 (252 - 315)
definitionCHROMAT_FILE: MSMg01no443_g11.b1 PHD_FILE: MSMg01no443_g11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:00 2005CHROMAT_FILE: MSMg01no443_g11.g1 PHD_FILE: MSMg01no443_g11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCCCCTTATTXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGCACAT
CCGCGGAATTCCCAAATTTTCTGAATTGGACAAGGCCTTAAGTCATGTTG
GGTGAAGCAGCAAGACTGTCGGAGTATCAGTGACATAGAACTCATAGCCA
CTCTGACTTCCTATTGTGTTCTCTTAGCCTGTGTGTTAAGGTCAGTCCAT
CGAATTTAGTGAGTGGTCTAGAGAGCACAGGTGAACATGTCAAGGAATAT
GTATAGATGCAAGGCCCCAAAGACCTGGTAACTGCTTTCCACCTGTCTAT
CAGTGAACTCTTTCTCTTGTCTTATCTTTCTAAAGAGAAGCAGCAGCAAC
AGTTCCTTACATAGCCTAACCCAACGCTCTGGGCTGGTCCTGTGTAGACA
ACTGTGAGTTGATCAGCGTATAGTCATAACTTCGTCTTTCCGAGACAGCA
TTTCACGTATCTCATGCTGGTTTCATTGATTATCCAAGGATGCTCATGAG
CTTCTTATCCTCTGCCTTTACCTCTGCAGTACTGGGATTGAGCTGTGGTC
CACCTTGTGTTTTATGGATATACTCATGTACACTTACTGATCTACCTCCT
CTGCCCATGTTTTACCCTTGAATGGGCACCAAGATATCCCCCCTCTTTCT
CTGCCCCCCGGTTTTTTCCGTTACTTTTCCCTTTTTTTCTTCTTTTTTTT
TCCCCTATTTTTTACCCGTACCTTTCTCTTTTTCCTTCCCG
TTTCGATGCTGTGGTAGGCTGGGCGGCGCCGGTTTCATACCTAGGNGACC
TATAGAAGTTAACGNAAAATTCCACCCCTCTACAAAGGCATGTTTCCTTC
AGATGTTGTTTTAATGTTTGCTTGGTGTTTTGGGTTTGATCGGTCTTGTG
TTTGCACTGTCTGGCCTGGAACTTGCTGCGTACACCAGGTGAGCCTCGAT
GAACTTGGCTGCAATCCTTCTGTCTCTGCTCTTAGGGTGCTGGGATTACT
AGAGCCCTCCACCACGCATGGCCTTGTTTCCTTAACTTTTTATTGTCCTG
GGGAATGATTTTTTAGTAATTCAACCCGCTTGGAGCGTCGGTGGAGACAG
GAGGCACACTTCCTCCGTTCTGCTCCCGTAGGAGCCATGATGGATTCTGT
TTTTCCACCCTCTCTGTGTCTTTCACTGTCCCAAATGTGATCCTTCCTTT
GTCAACCGGTTTCTCAGATTGACCCCCGGCTTTCTGTCTGACTCCGTCCC
CTATCTTGTATCATAATGTTCACCTTTCCAAGACTTTGTTTGTGATTTTT
CCCCCTTTCGATTTGCTTCTTTCTTTTGCCGTAAAAATTCTCTCTCTCCT
CCTTCCCCCCGCCTATCTTTAGAAATTTTATTTTGCCCGCGCCTTTTTTT
TTTTTTTCCCCTATTGTTTCTTTACACCCTTTTTCCTTTATCCCCTTTTT
TTTTTCCTTTTTTTCCCTTCTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_g11.b1 MSMg01no443_g11.b1 CHROMAT_FILE:
MSMg01no443_g11.b1 PHD_FILE: MSMg01no443_g11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:00 2005
         (241 letters)



>mm_chr11_63203364_63204008
          Length = 645

 Score =  323 bits (167), Expect = 6e-93
 Identities = 221/245 (90%), Gaps = 14/245 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaggccttaagtcatgttgg----gtgaagcagcaagactgtcggagtatcagtgacat 56
           |||||||||||||||||||||    ||||| ||||||||||||| ||||| |||||||| 
Sbjct: 391 caaggccttaagtcatgttgggccagtgaaccagcaagactgtcagagtaccagtgacag 332

                                                                       
Query: 57  agaactcatagccactctgacttcctattgtgttctcttagcctgtgtgttaaggtcagt 116
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| 
Sbjct: 331 agaactcatagccactctgacttcctattgcgttctcttagcctgtgtgttaaggtcagg 272

                                                                       
Query: 117 ccatcgaatttagtgagtggtctagagagcacaggtgaacatgtcaaggaatatgtatag 176
           ||||||| |||||||||||||||||||||||||||||||||||||||||| | |||| ||
Sbjct: 271 ccatcgagtttagtgagtggtctagagagcacaggtgaacatgtcaaggagtgtgtagag 212

                                                                       
Query: 177 atgcaaggccccaaagacctggtaactgctttccacctgtctatcagtgaactctttctc 236
           ||||||||||| ||| ||    ||    ||||||||||||||||||||||||||||||||
Sbjct: 211 atgcaaggccc-aaa-ac----ta----ctttccacctgtctatcagtgaactctttctc 162

                
Query: 237 ttgtc 241
           |||||
Sbjct: 161 ttgtc 157


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 645
Length adjustment: 9
Effective length of query: 232
Effective length of database: 636
Effective search space:   147552
Effective search space used:   147552
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)