BAC Information

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BAC

Clone NameMSMg01-443K05
Chromosome11 (Build37)
Map Location 47,380,831 - 47,381,147
singlet/doubletsinglet
Overlap genenone
Upstream geneBC053393, Dppa1, EG237749, Timd2, LOC620678, Havcr1, Timd4, Sgcd, LOC628753
Downstream geneLOC100039647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443K05.T7 (MSMg01no443_k05.b1)MSMg01-443K05.TJ (MSMg01no443_k05.g1)
ACCAG532997AG532998
length738769
length of high quality
(start - end)
244 (80 - 323)318 (80 - 397)
definitionCHROMAT_FILE: MSMg01no443_k05.b1 PHD_FILE: MSMg01no443_k05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:18 2005CHROMAT_FILE: MSMg01no443_k05.g1 PHD_FILE: MSMg01no443_k05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCGAACATGC
GCGGAATTCAGACCCGGTACCACACAGCTGTGTGTGTGTTGGGGGTCTCA
TATCAGCTGGGGTACACTGTCTGTTTGCCGGTCCAGTGTTTGAAAGATCT
CGGGGTCCAGATTAATTAAGACTGCTGGTCCTCCTACAGAATCTTTCTTC
TCCTCAGCTTCTTTCAGCTTCCCTAATTCAACAACAGAGGTCAGCTGCTT
CTGTCTATTGGTTGGGTGCAAATATCTGCATCTGAATCTTTCAGCTGCTT
GTTGCCTCTTTCAGAGGGCAATCACTANTTGTCCCTTTTTGTGAGCTCTC
TGTAGCCTCAGTAATAGTGTCAGACCTTGGGACCTCTCATTGAACTAGAT
CCCACTTTGGGCCTGTCACTGTATCTTCTTTTCCTCAGGCTCCTCTCCAT
TTCCATTCCTGCAATTCTTTCTTACAGAAATAATTATGGGTCAGAGGTGT
GATTGCGGTTAGGTTACCCCATCCCTCACCACTCTGGAATTCTATCCGGT
TGTTTTTCCGAAAATTGTTAATATACCTACCTGATTACACATCCCTACTC
TCTTCTTGAGAATATTTTTTCAAAGACGTTTCTTTTTTGTTTTTTTCCCT
CCCCGTTCCTCTTTCGTTCATATTCCGCCCTTATTTGCTTTTTTCTCACA
ACGTTTTTTTAACTTTCCCATTCCTTCTTTCCTTACTG
TTTACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTTACATGCTTTCCCTAAG
AGAATAGATTTATTTATTCAGCCTAAGTAAAATAGTAAGTTTCCGACAGC
TTTCTGCCTGAGAGTCTTCAGTTATTAAGTACAGCTAACTGATTCTGTAA
CTCTCACTCTGGTGAGTAACAGAGTGGCTCTCCTCTGTTTGCTGAAGGAC
TCTCAGAGTTTATGTTTTTAACTAGAATTCATTATCTGTGACAATTAAAT
GGTAGATCTTAGCTTATTTGCATAATTTGTTTTCATCTTTAAACTTTACT
TTGTTCTGCAAATACAGGCATCATCTTAAGTTGTGGGGTGTGTGTGTGTG
TGTGTCGCGTGCTTTTTTTCCTTTCCTCCTTTTTTCCCCCCCCCCTCTCC
CTTCTTCTTTTTTTTTTCCCACTTTTCCCTTTTCCCCCCCCTTTTTCTTC
TTTTCCCTCCTTTCTCTCTCCATCCTTTTTTTCCTTTATTGCCAACTCCT
TTCTTTCTTTTCCCCCCCTTTCCTTTTCTTTTCTTTCTTTTTTCCTCTTT
TCCTCTTCCTTTTTATCCATCTTACATTCCTCCCTTCCTTCTCCCTATAT
TTTATATTATCCCCTCCCTCATTTTTTTTTTTTCTCCCCCTTTTTTTTTT
TTTTCCCCCCCTCTTTTCCCTTTTTTCCCCTTTTTATTTTTCCCTGTATT
ATTACCTCCCTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_k05.g1 MSMg01no443_k05.g1 CHROMAT_FILE:
MSMg01no443_k05.g1 PHD_FILE: MSMg01no443_k05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:18 2005
         (318 letters)



>mm_chr11_47380631_47381347
          Length = 717

 Score =  545 bits (282), Expect = e-159
 Identities = 309/318 (97%), Gaps = 1/318 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttttacatgctttccctaagagaatagatttatttattcagcctaagtaaaatagtaag 60
           ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 tttttacatgctttccctaggagaatagatttatttattcagccaaagtaaaatagtaag 260

                                                                       
Query: 61  tttccgacagctttctgcctgagagtcttcagttattaagtacagctaactgattctgta 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttccgacagctttctgtctgagagtcttcagttattaagtacagctaactgattctgta 320

                                                                       
Query: 121 actctcactctggtgagtaacagagtggctctcctctgtttgctgaaggactctcagagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actctcactctggtgagtaacagagtggctctcctctgtttgctgaaggactctcagagt 380

                                                                       
Query: 181 ttatgtttttaactagaattcattatctgtgacaattaaatggtagatcttagcttattt 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 ttatgtttttaactagaatacattatctgtgacaattaaatggtagatcttagtttattt 440

                                                                       
Query: 241 gcataatttgttttcatctttaaactttactttgttctgcaaatacaggcatcatcttaa 300
           |||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 gcataatttggtt-catctttaaactttactttgttctgcaaatacaggtatcatcttaa 499

                             
Query: 301 gttgtggggtgtgtgtgt 318
           |||||||||| |||||||
Sbjct: 500 gttgtggggtatgtgtgt 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 717
Length adjustment: 9
Effective length of query: 309
Effective length of database: 708
Effective search space:   218772
Effective search space used:   218772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)