BAC Information

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BAC

Clone NameMSMg01-444F13
Chromosome11 (Build37)
Map Location 35,868,362 - 35,868,607
singlet/doubletsinglet
Overlap geneOdz2
Upstream geneSlit3, LOC100039006, Pank3, LOC666733, AI595406, Rars, Wwc1, LOC636532
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444F13.T7 (MSMg01no444_f13.b1)MSMg01-444F13.TJ (MSMg01no444_f13.g1)
ACCAG533535AG533536
length757744
length of high quality
(start - end)
239 (78 - 316)246 (373 - 618)
definitionCHROMAT_FILE: MSMg01no444_f13.b1 PHD_FILE: MSMg01no444_f13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:13 2005CHROMAT_FILE: MSMg01no444_f13.g1 PHD_FILE: MSMg01no444_f13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATAATTTGCGGCCGCTAAACGAANNAAATAGGTTCGGGATCCGCGGN
ANTCACNACATCACTTACTCACATCCTGAATGCAGCCTCCCGAGTGCTAA
TTTTACAGCCATTATACCTTCATGCCCAGCGTCTATGAATACACATATCT
AAGTGTCTTCTGACACGGGTCTTCATGTAGTAAGGCTGGCCTCAAACTTG
GTTGAAGATGACATTTACCTTCTGTCTGCCTCCCTAGTGCTGGGAGTATG
GTTGTGTGCTACCAGGCTCACATGTGGCCCATTTTAAAAACGGGGTTATT
TGAGTTTTGCTCGNTGATATTTTCTCTTTGCTAGNCTGGGCTAGGCTCTG
GGCTGGGTACTTATTATTTTGACCCTCCCTACGCAGTCACACTTCCTAGC
AGCTAACAGTTCCATGGAGCACACCTCTGAATGAACGATTACAAGAGAGG
TTGCTTTTATACTCCTTATGGAAGGAACTTGCCCATATCTAGCAAAATAG
GGACGCGTTTATTCCGCGGCTTGGTAATCCCGTGTATAGATATCGATCCC
TTAAATACCTGTTTATAATGATTTCCACACCGGAACCGTCCATGTTGGCT
TACTTTGTTCAAATTGGTTTTGAATCCATCCCTCTGTTTCCCCCCCCCGA
CCCTTTTTTTTTTCCATTCTTATCAAAAGCCCCACCACTTTACCCCTTTT
TTCACATACCTTCTTCCCTTCCCTATTTTTCCACCCCCTTTTTTCTCTTC
CCCCCCG
NCGATGAAGTGNGAGGCCTGGNGGNCGCCTGTTTTCAAAACTGGAGGTGA
CACTATAGAAGTACCAAAAAACATCCACGCACAGACATTACAAATCAGTC
ACAGAGCTCTTGACCGCTGAACTTCAGTTTGGCTTCTGAATCCTTCACCA
CTGCACTCACAGAAAACCATTCCTAGGCAACAGGTATCTTCCACTGAGAT
GCAACCCACCTGCCATCACTTCATCAGCCAGAAGTCCTGTCTCACCTGTT
ATCACCTGCGTCCCATGACAGCCACCTGGCCTGTCAGAGACTCCAAACTT
TCCCTTGTGCATATTCCCTAGTGACCAGGAGGAGNCTAAACCTAGGGATT
CTTCTCATTTAATTGAGCCACCAACTGACAGTTAGAAAGGGGGAAAAAAT
GAAAAAGATGGCTTGGGCGGTGGAGGTCCTTTCTACAAGAAACAAAGAAA
AGAAAAATGTTATGTTTGCATTATCATCAATTCCTCGGCTAACTGTTTGT
TCTTTTTTCCTTCTGTTTTCTTTCTATAAAGAAATAAAGAGTTTAAACAT
AGGTAAGACGAAGAACTCTTTCCCATATAATTTGCTATGGTTCGTTTGTT
CCTTGTGTTTGCTTTCTTGTTTTGTGCTTCTTGCGTAACATTGTATATTT
TCTTGTACCANACACAGNAACTTTTTTATGCGCTACTTGTGCGGTGTGGA
TATGATAAGCTTTTTGCACTATGAAATGCTGCCTAAAAGCAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_f13.g1 MSMg01no444_f13.g1 CHROMAT_FILE:
MSMg01no444_f13.g1 PHD_FILE: MSMg01no444_f13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:13 2005
         (246 letters)



>mm_chr11_35868162_35868807
          Length = 646

 Score =  468 bits (242), Expect = e-136
 Identities = 245/246 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactgacagttagaaagggggaaaaaatgaaaaagatggcttgggcggtggaggtccttt 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 446 aactgacagttagaaagggggaaaaaatgaaaaagatggcttgggcgggggaggtccttt 387

                                                                       
Query: 61  ctacaagaaacaaagaaaagaaaaatgttatgtttgcattatcatcaattcctcggctaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ctacaagaaacaaagaaaagaaaaatgttatgtttgcattatcatcaattcctcggctaa 327

                                                                       
Query: 121 ctgtttgttcttttttccttctgttttctttctataaagaaataaagagtttaaacatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ctgtttgttcttttttccttctgttttctttctataaagaaataaagagtttaaacatag 267

                                                                       
Query: 181 gtaagacgaagaactctttcccatataatttgctatggttcgtttgttccttgtgtttgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gtaagacgaagaactctttcccatataatttgctatggttcgtttgttccttgtgtttgc 207

                 
Query: 241 tttctt 246
           ||||||
Sbjct: 206 tttctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)