Query= MSMg01no444_h17.b1 MSMg01no444_h17.b1 CHROMAT_FILE:
MSMg01no444_h17.b1 PHD_FILE: MSMg01no444_h17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:23 2005
(518 letters)
>mm_chr11_15009485_15010401
Length = 917
Score = 835 bits (432), Expect = 0.0
Identities = 498/526 (94%), Gaps = 18/526 (3%)
Strand = Plus / Plus
Query: 1 gttggaaatctgcttatattactcaaccactactggtatttgagttagaattttatttga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttggaaatctgcttatattactcaaccactactggtatttgagttagaattttatttga 260
Query: 61 acagggttgtgaccatgggaatatttaacaacaaaaaaaggaacttgatacaaatgctaa 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 acagggttgtgaccatgggaatatttaacaac-aaaaaaggaacttgatacaaatgctaa 319
Query: 121 gtaataatgtatttttaataatttagaaaaaataagatacaactttatcatgttaaaggt 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 320 gtaataatgtatttttaataatttagaaaaattaagatacaactttatcatgttaaaggt 379
Query: 181 caaatttaaaatataattaattagcagcagaa-aaaaaaccaataatcgcctaataatga 239
||||||||||||||||||||||||||| |||| |||||| ||||||| ||| ||||||
Sbjct: 380 caaatttaaaatataattaattagcagaagaagaaaaaaacaataattgcc---taatga 436
Query: 240 ttaactgcct----aattttcagaaagtcctcagaactaaaccgaag--agtatgtatag 293
|||||||||| || ||||||||||||||||||||||| ||| |||||||||||
Sbjct: 437 ttaactgcctaaaaaa----cagaaagtcctcagaactaaacc-aaggaagtatgtatag 491
Query: 294 gagagacataaaaatagaaataaaaacttgaatgtctggttcaagttaaatgctagggtg 353
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 492 gagagacataaaaataaaaataaaaacttgaatgtctgattcaagttaaatgctagggtg 551
Query: 354 tatctttttggggag-ggagagctcagactataaatttccatattcaactacataggata 412
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tatctttttggggagagg-gagctcagactataaatttccatattcaactacataggata 610
Query: 413 taaaggaaaaaattaggaagtagaaataaagtgctttaaggtattgaaaataaatattta 472
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 taaaggaaaaaattaggaagtagaaataaagtgctttaaggtattgaaaataaatatttt 670
Query: 473 aataactaaaataagcttattgttatagttttgaaatatatgacaa 518
||| ||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 671 aatgactaaaataagcttattgttataattttgaaatatgtgacaa 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 917
Length adjustment: 10
Effective length of query: 508
Effective length of database: 907
Effective search space: 460756
Effective search space used: 460756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no444_h17.g1 MSMg01no444_h17.g1 CHROMAT_FILE:
MSMg01no444_h17.g1 PHD_FILE: MSMg01no444_h17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:23 2005
(585 letters)
>mm_chr11_15157423_15158402
Length = 980
Score = 961 bits (497), Expect = 0.0
Identities = 560/583 (96%), Gaps = 5/583 (0%)
Strand = Plus / Minus
Query: 3 ttaggagtgagattcctggctgagaatttccctgagattgtagtgtttataccatggact 62
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 780 ttaggagtgagattcctggctgagaatttccctgtgattgtagtgtttataccttggact 721
Query: 63 tttccaaacacctgataggcttctttcttgggaacatatcttttttttttccccacttat 122
|| |||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 720 ttcccaaacacctgataggcttctttcttgggaacatatcttttttt----cacacttat 665
Query: 123 ttctctgtatggacttttctaatcctagacttagtccacagtaggctatgttctttgtgt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ttctctgtatggacttttctaatcctagacttagtccacagtaggctatgttctttgtgt 605
Query: 183 tatttaccttcttttaccttaggtcttagtacctgaggtcccaagcaaatgtgtccttca 242
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 604 tatttaccttcttttaccttaggtcttactacctgaggtcccaagcagatgtgtccttca 545
Query: 243 ttttttccttgggttttcttttcctcagtgtgactatatactgggctctttgtattacca 302
| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 544 ggtcatccttgagttttcttttcctcagtgtgactatatactgggctctttgtactacca 485
Query: 303 gttctttttcctcaagatctgcagggtctgattcaataagactcttatgcttgtgggctc 362
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 484 gttctttttcctcaagatctgcagggtcagattcaataagactcttatgcttgtgggctc 425
Query: 363 cctccacaatgagatgacccaacagaaatacctaaatctagacctgggcttggcacttcc 422
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 cctccacaatgagataacccaacagaaatacctaaatctagacctgggcttggcacttcc 365
Query: 423 tcaagttgtaggattgatcttttcatgattgggaatgaagacaattggagggctctggtt 482
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 364 tcaagttgtaggattgatcttttcacgattgggaatgaagacaattgtagggctctggtt 305
Query: 483 gtctgctttcagtagcttttctgatatttgcagctagctctatcttggatcaactgacca 542
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gtctgctttcagtagcttttctgatatttgcagctagctctatcttggatcaactgacct 245
Query: 543 gctgaagttaccaacaaactttccttttttgtgatatcttgag 585
||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 244 gctgaagttaccaacaatctttcctttttt-tgatatcttgag 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 980
Length adjustment: 10
Effective length of query: 575
Effective length of database: 970
Effective search space: 557750
Effective search space used: 557750
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
