ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGTTTTCATAACAGATAATTTTAATAAAATCTTTCCTATAGGTATTT
TAGCAGTGGAAATTTAATTAGTATCCTTTAATAATGTCTTACAGTTATGT
GAGATTTAGCTTTAAGAACTACAAAAAAAGAATTGAGTAAATCTGAGAAA
TTACATAAATTCTGGTGACTAGTATTATAATGTTTTGAAAACATTTTTGC
TCACCATAGAGTTATATAATACTCAGACTATGTGATTTTAATAGTAAAAT
AAGAGATACTGATTTCTAGGAATAACTTTATTATTATTATTATTATTATT
ATTATTAATTTATTTTTACTATTCAGCCCCTTCCTATCCCTCATCCCACA
GTTCCTCATTCCATTGCTCCTTCCCCATGCCTCCCCTCTCCCTGGGGCCT
CAAGTATCTCCAGGATTAGGTATATCATCTCCTACTGAGGGTGGATCAGG
CAGTCCTCTGCTCTATGTATGCTAAGGGTCTAGGATCAGTCCACATATGC
TGCCTGGGTGGTGGCTCAGTCTCTGGGAGCTCTCTGGTGCCTGGTTTAGT
TGACTGTATTGTCGTCCTCTCCTTCCGCTTCTTCATTCTCGCCCTTATTC
CCTTTTTCGTGTCATTCCTCATCCCCTTCTCTCTGGGTAATTTAATCATT
TCCTTTTAGAGTGTACCCCCCTTCCCATTTCTCCCCCCCGCCG

AAAACACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAAT
GGCTGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCGTCAGGGAAA
TGCAAATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAG
AGGAACACTCCTCCATTATTGGTGGGATTGCAAGCTTGTACAACCACTCT
TGAAACCAGTCTGGCAGTTTCCTGATTATTGGACGTAGTACTACCGGAGG
ATCCCACAATACTTCTCCTGGGCATATATCCAGAAGATGTTCCAACTGGT
AAGAAAGATGCATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGC
CAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGACTGGATACAAA
AAAATGCGGTACATTTGCACAATGGAGTACTACCCAGTTATTAAAAAGAA
TGAATTCATGAAATTTCTTGGGAAACGGTTGGATCCGTAGGGTATTATCC
TGAGAGAGGTATCCCAATCTCCAACGAACTCTAACAATATGGCCTCACTT
GTTTTTTTNATATACCCCAGAAACTCATAAATACTTTAGACTTTCGTACC
TCTTCGCTCCATCTTTTTCTCCTCTTTAT

Query= MSMg01no444_i05.b1 MSMg01no444_i05.b1 CHROMAT_FILE:
MSMg01no444_i05.b1 PHD_FILE: MSMg01no444_i05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:26 2005
         (489 letters)



>mm_chr11_21526709_21527596
          Length = 888

 Score =  820 bits (424), Expect = 0.0
 Identities = 473/492 (96%), Gaps = 9/492 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   taattttaataaaatctttcctataggtattttagcagtggaaatttaattagtatcctt 60
           ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||
Sbjct: 201 taattttaataaaatctttcctataagtattttagtagtggaaatttaattagtattctt 260

                                                                       
Query: 61  taataatgtcttacagttatgtgagatttagctttaagaactacaaaaaaagaattgagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taataatgtcttacagttatgtgagatttagctttaagaactacaaaaaaagaattgagt 320

                                                                       
Query: 121 aaatctgagaaattacataaattctggtgactagtattataatgttttgaaaacattttt 180
           |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 aaatctgagaaattacatgaattctggtgactagtattataatgttttgaaa-cattttt 379

                                                                       
Query: 181 gctcaccatagagttatataatactcagactatgtgattttaatagtaaaataagagata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gctcaccatagagttatataatactcagactatgtgattttaatagtaaaataagagata 439

                                                                       
Query: 241 ctgatttctaggaataactttattattattattattattattattattaatttattttta 300
           |||||||||||||||||||||||||||| |||||||||||  |||  || ||||||||||
Sbjct: 440 ctgatttctaggaataactttattattaatattattatta--att--ta-tttattttta 494

                                                                       
Query: 301 ctattcagccccttcctatccctcatcccacagttcctcattccattgctccttccccat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 495 ctattcagccccttcctatccctcatcccacagttcctcattccattgctccttccccac 554

                                                                       
Query: 361 ---gcctcccctctccctggggcctcaagtatctccaggattaggtatatcatctcctac 417
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 caagcctcccctctccctggggcctcaagtatctccaggattaggtatatcatctcctac 614

                                                                       
Query: 418 tgagggtggatcaggcagtcctctgctctatgtatgctaagggtctaggatcagtccaca 477
           ||||||  ||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 615 tgagggcagatcaggcagtcctctgctctatgtatgctaagggcctagaatcagtccaca 674

                       
Query: 478 tatgctgcctgg 489
           ||||||||||||
Sbjct: 675 tatgctgcctgg 686


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 888
Length adjustment: 10
Effective length of query: 479
Effective length of database: 878
Effective search space:   420562
Effective search space used:   420562
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)