BAC Information

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BAC

Clone NameMSMg01-444K14
Chromosome11 (Build37)
Map Location 113,006,097 - 113,006,217
singlet/doubletsinglet
Overlap gene2610035D17Rik
Upstream geneEG668396, EG667038, LOC100041610, LOC671963, LOC667047, BC006965, Sox9
Downstream geneSlc39a11, Sstr2, Cog1, D11Wsu99e, D11Wsu47e, D11Ertd636e, Cdc42ep4, Sdk2, LOC100041739
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444K14.T7 (MSMg01no444_k14.b1)MSMg01-444K14.TJ (MSMg01no444_k14.g1)
ACCAG533775AG533776
length780780
length of high quality
(start - end)
83 (72 - 154)122 (121 - 242)
definitionCHROMAT_FILE: MSMg01no444_k14.b1 PHD_FILE: MSMg01no444_k14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:37 2005CHROMAT_FILE: MSMg01no444_k14.g1 PHD_FILE: MSMg01no444_k14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATGGCGAGGGGCGGCGG
AATCATGTTGGTAACGAAACATCTTCTCCCTGTTTTGATGGGGGTTTTTG
TTTGTTTGTTTTGATATCCTGTTTCTGCCTACACTAACTATCCCTAGAGT
GCGAAGTCCTACCACTAGGTTTGTGCAGGTGGCCAATGATGAGCCAGGGC
TTCTCAGAAGCTCCTCCTGGTCGGTTTTAAATCTACCATGTCACATTTTC
TTTCCTTCCATCTATTTTACAATTTTTTGTTTATTACTTTGCTGCCAAGG
GATTGTTGCGCATTTTTTTTTTTAAGGCCAGCTTCCACGAGCCACCTCCT
TCCTCCTATTATGCCAGCCTTCCTTCAGGCTCAGTGATAGGCTCTAATCC
ACCTCATTATCTTGCTCAGCACCTTTGTTTAATTGCCACACGCATTTCTG
ATGCATCTTCTCTATCCCTGCTCCTTGCATCGCGTATGTTCTGCCCTTCT
CCCTTGTGATTCCATGTTTTTCTCCTTTTGCTCCCCGTCAATATTCTCCG
TTTCCCGTCTTTCGCTACCCCTTTCCCCCCCCTCTCCATACCCATACTCG
CTTCCGCTTTTCCCCCCCTCTCCCCCTCTCTTACCTCTTCAACTCCCTCA
TCCTTCCGCCCCCCCATTTTTTTCCCGTGTTTTTTGCCCTCCTCTCTTCC
TCACTCCCCCCTTACCTCCCGTTGCCTCTTCCCCCTTCCACGCCTCCCCC
TTTCCTCTGCCCTTTTCCTCTGTCCCACCT
CCGATGCAGTGGGAGGNCTGGNGGNCGGCGGGCCTGCCTGATCTGNNGAA
CNANAGAAGGATTGCGGCACGGGGGCCACCNGGGAATTAGGGGGACCCTG
TCCCAGGGACTTTAATGCCACTGGGTAGTAGCTAAGTGAGGAGAGGTTGT
TTGGTTTATGGTGAGCCCTACATTCAACCCCAGGTAATGGGAGAATGAGA
CAAAAAAAACAGGGAGAGAGGGCTGAAGGAGGGAGGGGGAAAGTTTGTTA
GAGAGAAGGAAGGAGGGAAGAGAAAGAGAGGCAGANACCNACCCCCCGCG
CGACCCCACTTTTCGCTGCTTTTAAAACAACGCGGGGGCGGGCGCGGGAG
AGATTTTTTTTTTCCCCCCCCCTCCCGGTGGGGGGGCGCGGCCCNCCCCA
CCAGCCAACGCACCCCCTTTTTTTTTTTTTGTTGCTGCGTCTCAGCGCGG
GCGGACCTACCACGTACAACCCCGAGTCACTCCGTCATTTTATCATTAAA
AGGCCATTTAGGCTCACGTAACCTGCCATAAGTCGAGACTCTTTCCTCGT
GTCCTACACCTCTGCACTTCGTCCGCGTCCGCGAACATTCCTTTATCCCA
CATAACGCTCCATCCCATCTTACACCCCCTCCCGTGGTCGCCCGCCCCGA
CAAAGAGGCGTTTCTTTTTTTTTTTTTTTTACCCGCGCCGCGTTTCTTCC
CCGGGCCCTCCGCTGGGACGAAGCATCCGCGTTGTCAGCTGTTCCGTATT
GGCACCGGCGCGTCTAGACCCCTGTCGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_k14.g1 MSMg01no444_k14.g1 CHROMAT_FILE:
MSMg01no444_k14.g1 PHD_FILE: MSMg01no444_k14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:38 2005
         (122 letters)



>mm_chr11_113005897_113006417
          Length = 521

 Score =  190 bits (98), Expect = 3e-53
 Identities = 116/122 (95%), Gaps = 1/122 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgggtagtagctaagtgaggagaggttgtttggtttatggtgagccctacattcaaccc 60
           ||||| |||||||||||||||||||||||| |||  ||||||||||||||||||||||||
Sbjct: 201 ctgggcagtagctaagtgaggagaggttgtctggcatatggtgagccctacattcaaccc 260

                                                                       
Query: 61  caggtaatgggagaatgagacaaaaaaaacagggagagagggctgaaggagggaggggga 120
           |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 caggtaatgggagaatgacacaaaaaaa-cagggagagagggctgaaggagggaggggga 319

             
Query: 121 aa 122
           ||
Sbjct: 320 aa 321


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 122
Length of database: 521
Length adjustment: 8
Effective length of query: 114
Effective length of database: 513
Effective search space:    58482
Effective search space used:    58482
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)