BAC Information

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BAC

Clone NameMSMg01-444P10
Chromosome11 (Build37)
Map Location 114,587,868 - 114,588,099
singlet/doubletsinglet
Overlap genenone
Upstream geneCdc42ep4, Sdk2, LOC100041739, LOC634710, 4932435O22Rik, Rpl38, Ttyh2
Downstream geneDnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444P10.T7 (MSMg01no444_p10.b1)MSMg01-444P10.TJ (MSMg01no444_p10.g1)
ACCAG534006AG534007
length798760
length of high quality
(start - end)
179 (76 - 254)237 (83 - 319)
definitionCHROMAT_FILE: MSMg01no444_p10.b1 PHD_FILE: MSMg01no444_p10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:01 2005CHROMAT_FILE: MSMg01no444_p10.g1 PHD_FILE: MSMg01no444_p10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATCACGCGG
AATCTAGGGACCATTCCCAAAACACCAGCCTTGGATGGTAAGCATTTCAC
CCACTGAGCAGACCACACATCCAGCTTTTTATATGGGTTCTGGGGACCAA
GCTCGGGCCCTTGCACTTGTGTGGCAAGCACTTTCACCCACTGAGCCTCC
TCTCCAGCCCTGATGGCCACTCTTTAGCATAAATTAGGAGCATTCAGCTT
TTCAGTTCTTTAGCAGGACACTGTTACACACATAATACATACATACATAC
ATATACACATACACACATACTTTTTTTTTATCCATCTACCCACCTACCCA
CCTACCTACCCATCCATCTGTCCATCCATCTACCCATTCACTGCATATTG
ACTACTGCTCCTGACTCCCTGCCTCCTTTTTGCTTTCTGACCATTATCGT
ATGGGTGTACCCTCATTACCTTTGTTTTACACCTTCCGGGCCATCATTTT
TCTTTGCTTTTCTTTTCTATTTATCCCCTATCCCCTTTTTTTACTTTTTC
TCTCCTTCCCTCCTTCCCCTTTTTTTTTATCCCCTCTTTTTCTCCCTTTT
CATTTACCACCTCGACTTTCCCGCCTTTCTCCTTTTTTCTCCCCCCCTGC
ACCCCTCCTTTTTTCTTTCTCCCCCCTTTTTTTCTTTTTTTTTTTTTTTC
CTCCTTTTTTTCCCCCCTTTTCCCCCCTTTTTCCCCCCCAATCTCCCTCC
ATTTCCCTTTTATTTATCATATGCCTCCGCCTATTCTTTTTTATTTTA
NNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTCTCTCCTTCACCAT
GTGTGTCTGGGGCTCAACCCTAGGTCATAGAAGTGGTAGCAAGCCCCTTT
CTCTACTGAGCCATCTCACCAGTCCTAGATATAGGACTCTACCTCCCTTC
TTTAATTCTTTTTAAATTATTGATGATGATGATGATTGTGGGTGTGCTAC
ATGACACAGATCAGAGGACAACTTTGTGGAATCCATTCTTTTTTTCCCCC
CATTTTTATGTGGGTTCTATTTTTTGAACTCTGCTTGTCAGGCTTACCCA
ACAAAGGGCCTTGTACTCAGCCTGTCCATCAATCCCTCCTACATTTTCTC
ACTTCCTTGCCNCAAGCTCATGAGAAACACATCTCTCTTTGTGGCATTCA
TGTGTCCATCAGCTCATTCATTCTTGTAATGAAACCATATTTACAACGTG
CCAGTCGCATAGCTAAGCCTTGCTTGCTTGTATTGAGCCCGACCCTCCAG
GAAATTTCCTTCCGGTATAAGAATTCCCATGCGTTGTGGCGCCCGCTTTT
TTTTTCCCTCCTTCCCTTCCCTCCGTTTCTTCCACTCTTTTTCAGCTTTT
TTTTTTTTAGGCGTCCGGCGTCTCGTCTTTCCTCTGCTTTTTTTGTTACC
TCCGCTCCCGCGCACGTCTTCCCATCTCCTCTCTTGTCGCGCTTACCTTC
CCCCCGTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_p10.g1 MSMg01no444_p10.g1 CHROMAT_FILE:
MSMg01no444_p10.g1 PHD_FILE: MSMg01no444_p10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:01 2005
         (237 letters)



>mm_chr11_114587668_114588299
          Length = 632

 Score =  431 bits (223), Expect = e-125
 Identities = 232/237 (97%), Gaps = 5/237 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttctctccttcaccatgtgtgtctggggctcaaccctaggtcatagaagtggtagcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttctctccttcaccatgtgtgtctggggctcaaccctaggtcatagaagtggtagcaa 260

                                                                       
Query: 61  gcccctttctctactgagccatctcaccagtcctagatataggactctacctcccttctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcccctttctctactgagccatctcaccagtcctagatataggactctacctcccttctt 320

                                                                       
Query: 121 taattctttttaaattattgatgatgatgatgattgtgggtgtgctacatgacacagatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taattctttttaaattattgatgatgatgatgattgtgggtgtgctacatgacacagatc 380

                                                                    
Query: 181 agaggacaactttgtggaatccattctttttttccccccatttttatgtgggttcta 237
           |||||||||||||||||||||||||    ||||||||| ||||||||||||||||||
Sbjct: 381 agaggacaactttgtggaatccatt----ttttccccc-atttttatgtgggttcta 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 632
Length adjustment: 9
Effective length of query: 228
Effective length of database: 623
Effective search space:   142044
Effective search space used:   142044
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)