BAC Information

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BAC

Clone NameMSMg01-445G07
Chromosome11 (Build37)
Map Location 30,773,669 - 30,774,079
singlet/doubletsinglet
Overlap genePsme4
Upstream geneC230094A16Rik, Spnb2, EG666427, LOC666432, 4930505A04Rik, Acyp2, LOC654445, LOC666452, LOC666470, LOC631243
Downstream geneGpr75, LOC100042469, 4933407N01Rik, Asb3, Chac2, Stc2, 2310022M17Rik, Cpeb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445G07.T7 (MSMg01no445_g07.b1)MSMg01-445G07.TJ (MSMg01no445_g07.g1)
ACCAG534335AG534336
length734753
length of high quality
(start - end)
500 (38 - 537)411 (70 - 480)
definitionCHROMAT_FILE: MSMg01no445_g07.b1 PHD_FILE: MSMg01no445_g07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:34 2005CHROMAT_FILE: MSMg01no445_g07.g1 PHD_FILE: MSMg01no445_g07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTT
GTTTATACTCTGTACCCCATTTTTAATAGGGTTACTTGGTTTCCTGGGGT
CTAACTTCTTGAGTTCTTTGTATATATTGGATATTAGCACTTTATCAGAT
TTAGGATTGGTAAAATCTTTTCCCAATCTGTTGTTTTTGTCTTATTGACA
GTGTCCTTTGCCTTACAGAAGCTTTGCAATTTTATAAGGTCCCCTATGTC
AATTCTTGATCTTACAGCACAAGCCATTGGTGTTCTCTTCAGGAATTTTT
CCCCTGTGTTTTTATCTTTGAGGCTCTTCCCTACTGTCTCCTCTATAAGT
TTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGACCCACTTAGACTTGAG
CTTTGTACAAGGAGATAGGAATGGATCAATTTACATTCTTCTACATGCTG
ACTATCAGTTGAGCCAGCACCATTTGTTGAAGATGCTGTCTTTTTTTCCC
TGGATTGTTTTAGCTCCTTTGTCAAAGATCAAGTGACCATAGGTGTTGAG
GTCACTTCTGGGTATTCAGTTCTATTCCACTGATCTACCCGTCTGTCTTT
GTACCAGTACCATGCACGCTTTATACACACCGCTTTGTATTACAGTTGGA
GGCCAAGATAGTTGATTCCCCACAAATTCTCTTATTGGTGAAAAAACTTT
TCCCTTTCAGGTATTTTCTATCTTTCCCAATGTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAAGATAAAAGGAATGCTCAGTGGTAGAGTA
TTTGATTAGCTTATAAGAAGCCCTTAATTTAGTCCCAGGACCACAATATA
TTTATAAAAAAACAGGGCAACCAAATGACAGTACAAGAAACCTCTCCAGG
AATACAGAGTGAAATATTGGTGGTTTTGTTGATATTTTTAACATTTTTAA
AAATTATTTTGTTTATGTGTTAATTTGTGGAGAAATTTTATTTTCTCTAT
AGTAGTTATACTTCTATAATCCTTATATAGCTTTATGTACTTTGAGGCCA
CAGATGCCTGGGGAATCTGGTGATATATTTGTCATGAAAAAGAAAGAAAA
AGTAAATTTTACATACATTTCTAGGGAAGGTCCCCACTCAGCTTTCCATA
CCTCTCTGGGACCCTTTATCACCTCAGACTTAGGATCTCAGTTCTAATAG
AAGTGATTATTCCTCCAGGTTCGAGAAATGGCTGCTACCACCTTAAAGGG
TCTGGTACAGGGTAACTTCCTTTACATGGACAGCGGTATTGCTAATTCTT
TTTGAAGCAACTTGGTCATACACAATTACCCCAGAAAAAAAAACGAGACC
CTGGTTTCTGGGGATAAAACATTTTCTTTCGGCGGGAAGCGAATATTTCC
TCTCTCCTTTTCAAACCCTCTTGTTTTCGTCTTTTCTCTGCCACATTTTC
TCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_g07.g1 MSMg01no445_g07.g1 CHROMAT_FILE:
MSMg01no445_g07.g1 PHD_FILE: MSMg01no445_g07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:34 2005
         (411 letters)



>mm_chr11_30773469_30774279
          Length = 811

 Score =  787 bits (407), Expect = 0.0
 Identities = 410/411 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagataaaaggaatgctcagtggtagagtatttgattagcttataagaagcccttaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagataaaaggaatgctcagtggtagagtatttgattagcttataagaagcccttaatt 260

                                                                       
Query: 61  tagtcccaggaccacaatatatttataaaaaaacagggcaaccaaatgacagtacaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagtcccaggaccacaatatatttataaaaaaacagggcaaccaaatgacagtacaagaa 320

                                                                       
Query: 121 acctctccaggaatacagagtgaaatattggtggttttgttgatatttttaacattttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acctctccaggaatacagagtgaaatattggtggttttgttgatatttttaacattttta 380

                                                                       
Query: 181 aaaattattttgtttatgtgttaatttgtggagaaattttattttctctatagtagttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 aaaattattttgtttatgtgttaatttgtggagaaattttattttctttatagtagttat 440

                                                                       
Query: 241 acttctataatccttatatagctttatgtactttgaggccacagatgcctggggaatctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acttctataatccttatatagctttatgtactttgaggccacagatgcctggggaatctg 500

                                                                       
Query: 301 gtgatatatttgtcatgaaaaagaaagaaaaagtaaattttacatacatttctagggaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgatatatttgtcatgaaaaagaaagaaaaagtaaattttacatacatttctagggaag 560

                                                              
Query: 361 gtccccactcagctttccatacctctctgggaccctttatcacctcagact 411
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtccccactcagctttccatacctctctgggaccctttatcacctcagact 611


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)