BAC Information

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BAC

Clone NameMSMg01-446N09
Chromosome11 (Build37)
Map Location 47,390,189 - 47,390,469
singlet/doubletsinglet
Overlap genenone
Upstream geneBC053393, Dppa1, EG237749, Timd2, LOC620678, Havcr1, Timd4, Sgcd, LOC628753
Downstream geneLOC100039647, LOC192895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446N09.T7 (MSMg01no446_n09.b1)MSMg01-446N09.TJ (MSMg01no446_n09.g1)
ACCAG535436AG535437
length730739
length of high quality
(start - end)
286 (319 - 604)228 (322 - 549)
definitionCHROMAT_FILE: MSMg01no446_n09.b1 PHD_FILE: MSMg01no446_n09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:29 2005CHROMAT_FILE: MSMg01no446_n09.g1 PHD_FILE: MSMg01no446_n09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTGCGGCCGCTATACGACTACTATTTTCAGAAAGCCGCGGAATTCAATGG
CCTTACTAATGATCAACACAGATTATGATTTGCCTTTTATTATTTTGCTC
CTAGAGCCTCTCTTTTATACTTCCTGTCTTCACAAGAAGGTAAGTTTGAG
AATCTTTCCAGTGTGCCAAACCATGGGATCCTGGGAGCACTGCTAAATGG
ATGGTGCCCACACCATCTCAGGTTATCCTACCATCCTGGAAAGTTCATTT
TGGTTTAGGGTATGTAAACACACACACACATATACACACACACACCTGTG
TGCATATATATTGTTATATGTATGTGTGTATACATGTATATATGTGTATG
TGTGATCAACTTAATAGATCCCCACAATATTCATTTATCACTAAGCAGAA
ATTTCCTCACATCTTTGTGAACAAAGAGAGTTTATTTTCCCTTTACCGAT
CCATTGTTATCTAAACAGAGAATATTTTTATATCCAAGATCTCTAAAACT
TTGCTGAATTTATGTTTTAAGTGACTGGCAAACGGAGCATAGACATTCTG
AATTAAAGATCAACACACACTCAAAATAAGGAGCTCATTCAAAATCCCAA
CCCCATGTATAGACTTCTCTGGGACTTTTACAGAAGCTATAATGAATGTT
TTATCTTTCCTTTCTGCTAGACACCTGTGAGCAAAGACACCTGCTACCCC
TGACACACATCTATTGTCCAGCATATTTCN
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATCAGCCAGTAAACAGACTAGTGATAGGAGAG
CTCCCGAATGTGTGACTCATCAAACAAGTTGGAACATTCAGGGAAAACTG
CTCTTCATTTGCTCTCTCGGGTGTTCCTCTGGTAAACTAAATGTAGCTGT
CTCCTAGGGTAGGGGCACTCTGTGATGATGAGATTGTAGAGACTCTGATA
ATACTACATATTTGAGGTGCCACACACCTTTTGAAACGTGGGCAGAGATC
CTGGCAAGAATGGTTGTACTGAGCATTGAAGTAAGTCAGTAACATGTCTT
GCTAGTTGTGATTCTTCCCATCTGTCAGCATACTTCTGTTGCAGAGGTGT
GATGCTCTGGTCAGTTTTATATAAAGTTGTTGCAACCTGAAGTCACCTGG
GAAGATGGAACCACAACTCCAAACATGTCTCCTGTCTGATGGGCATGTAG
TAAAGTCTGTGGGGCATTTTATTGGTCGATGATTGATATGGTAGTGGGAG
ATGCCACACCTGAGTAGGTGGTCTTCCCATATATTGAAGCAAGTAAAGCA
AACTGTGATAGCAAGTCTGGGAACTATTATTCCTTTCTGGCCTCTGGTTT
TTTTTTCTTGTTTGAGATCCCTTTTTTTGAACTCCTGTCCTGGCTATAAT
CTGTGGAGTGAAATGACCCCTTTCCTCCCCCCAATGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_n09.b1 MSMg01no446_n09.b1 CHROMAT_FILE:
MSMg01no446_n09.b1 PHD_FILE: MSMg01no446_n09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:29 2005
         (286 letters)



>mm_chr11_47389989_47390669
          Length = 681

 Score =  514 bits (266), Expect = e-150
 Identities = 279/286 (97%), Gaps = 5/286 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtatgtgtgtatacatgtatatatgtgtatgtgtgatcaacttaatagatccccacaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtatgtgtgtatacatgtatatatgtgtatgtgtgatcaacttaatagatccccacaat 260

                                                                       
Query: 61  attcatttatcactaagcagaaatttcctcacatctttgtgaacaaagagagtttatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attcatttatcactaagcagaaatttcctcacatctttgtgaacaaagagagtttatttt 320

                                                                       
Query: 121 ccctttaccgatccattgttatctaaacagagaatatttttatatccaagatctctaaaa 180
           |||||||||     ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccctttacc-----attgttatctaaacagagaatatttttatatccaagatctctaaaa 375

                                                                       
Query: 181 ctttgctgaatttatgttttaagtgactggcaaacggagcatagacattctgaattaaag 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 376 ctttgctgaatttatgttttaagtgactggcaaatggagcatagacattctgaattaaag 435

                                                         
Query: 241 atcaacacacactcaaaataaggagctcattcaaaatcccaacccc 286
           ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 436 atcaacacacactcaaaataaggagctcagtcaaaatcccaacccc 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 681
Length adjustment: 9
Effective length of query: 277
Effective length of database: 672
Effective search space:   186144
Effective search space used:   186144
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)