Query= MSMg01no447_e24.b1 MSMg01no447_e24.b1 CHROMAT_FILE:
MSMg01no447_e24.b1 PHD_FILE: MSMg01no447_e24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:10 2005
(529 letters)
>mm_chr11_66312185_66313113
Length = 929
Score = 824 bits (426), Expect = 0.0
Identities = 470/496 (94%), Gaps = 19/496 (3%)
Strand = Plus / Plus
Query: 5 gaattcctagctgttgccagccaggcacctggttccaggacagcatgttgaatagtagaa 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattcctagctgatgccagccaggcacctggttccaggacagcatgttgaatagtagaa 261
Query: 65 ccactccatgctctgatgcctgcccccttaatatccccctaggacctcagccactctact 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ccactccatgctctgatgcctgcccccttaatatccccctaggacctcagccactctact 321
Query: 125 acaattggtgagtggttgatctaacgagtgggaatatcacagtaaatttccactttgaac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 acaattggtgagtggttgatctaacgagtgggaatatcacagtaaatttccactttgaac 381
Query: 185 gtgtgcccaaaagttcggtttaaacggcggctgctcaaattgcagcactgtgtggcaaag 244
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 382 gtgtgcccaaaagttcggtttaaacggcggctgctcaaattgcaacactgtgtggcaaag 441
Query: 245 gaccggcgctatttggaaaagcatcctgtttgataccagctatagaagatgaagcttgtt 304
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gaccggcgctatttggaaaagtatcctgtttgataccagctatagaagatgaagcttgtt 501
Query: 305 gtgaaatcgcttgtacattgcagctccactactgagaatgcttcccaggcatcctcattc 364
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 502 gtgaaatcgcttgtacattgcagctccactactgagaatgcttcccaggcattctcgt-- 559
Query: 365 ccccccccca-----------aaaaaaagctaagtggagagttgtaatttgagaaatacg 413
|||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 560 ------cccagaaaaaaaaaaaaaaaaagctaagtggagagttgtaatttgagaaatatg 613
Query: 414 aggagggattcttgagacagaactgagtcatgtaagcagtgcctttccctctcaactcac 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 aggagggattcttgagacagaactgagtcatgtaagcagtgcctttccctctcaactcac 673
Query: 474 cagaagaatggatata 489
|||||||||| |||||
Sbjct: 674 cagaagaatgtatata 689
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space: 476961
Effective search space used: 476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no447_e24.g1 MSMg01no447_e24.g1 CHROMAT_FILE:
MSMg01no447_e24.g1 PHD_FILE: MSMg01no447_e24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:10 2005
(398 letters)
>mm_chr11_66434578_66435375
Length = 798
Score = 762 bits (394), Expect = 0.0
Identities = 397/398 (99%)
Strand = Plus / Minus
Query: 1 ccggtgcttgttggacatgtccttataaggagaaagtaagtctgacctgtaaactggcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ccggtgcttgttggacatgtccttataaggagaaagtaagtctgacctgtaaactggcca 539
Query: 61 ccaggctatgtgactagctcaaggatggcaggggttctaagactatgtgtgctgggacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ccaggctatgtgactagctcaaggatggcaggggttctaagactatgtgtgctgggacat 479
Query: 121 gcatgcccagagcaggaaggaagcagtcctactcctgccagtcacaggaagagattttgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gcatgcccagagcaggaaggaagcagtcctactcctgccagtcacaggaagagattttgg 419
Query: 181 gggtttggatagtctcgacctcactcttgctcctgattggttttctcaatatcagggttt 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gggtttggacagtctcgacctcactcttgctcctgattggttttctcaatatcagggttt 359
Query: 241 tctggccccacactggtcaaaaggagaacagcatcctcctcttgttcctctctgtgatgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tctggccccacactggtcaaaaggagaacagcatcctcctcttgttcctctctgtgatgt 299
Query: 301 gtgtgctgaattctccgaggctgtgagccagtcatcactaatcagtactaatgaagaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gtgtgctgaattctccgaggctgtgagccagtcatcactaatcagtactaatgaagaaaa 239
Query: 361 cccctccaccattgggagccatgctccaatttgctgag 398
||||||||||||||||||||||||||||||||||||||
Sbjct: 238 cccctccaccattgggagccatgctccaatttgctgag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 798
Length adjustment: 9
Effective length of query: 389
Effective length of database: 789
Effective search space: 306921
Effective search space used: 306921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
