BAC Information

Click to search

BAC

Clone NameMSMg01-448K04
Chromosome11 (Build37)
Map Location 107,939,561 - 107,939,797
singlet/doubletsinglet
Overlap genePrkca
Upstream geneBptf, LOC100042899, Nol11, LOC671692, Pitpnc1, Psmd12, A830035A12Rik, Helz, Cacng1, Cacng4, Cacng5
Downstream geneApoh, LOC100041381, Ccdc46, Olfr1397-ps1, LOC629945, Axin2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448K04.T7 (MSMg01no448_k04.b1)MSMg01-448K04.TJ (MSMg01no448_k04.g1)
ACCAG536802AG536803
length724781
length of high quality
(start - end)
---237 (82 - 318)
definitionCHROMAT_FILE: MSMg01no448_k04.b1 PHD_FILE: MSMg01no448_k04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:58 2005CHROMAT_FILE: MSMg01no448_k04.g1 PHD_FILE: MSMg01no448_k04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCCCCCAAATAACCGACCAAAACAGAATAACAGAACCGGGACCGCGGGA
AAAAGAACCAAAGAAAGGAGGGAAAGACACAAAAAAACAAGGAGGAAGAC
AGAGCACGAGGGGAGCAGGGCGAAGAAGGGACGGCAGAGAGGGGGAGGGA
AGCCGGGGGGGCCGGGCAGGGCACGGGGACCAGCCGGCAGAGAGCCAGGG
AAAAAGGCGAGGGACCGGGGGCCCGGAACCGGGAACCGCCAAAAGGAATG
GCGGAGGGAAGAGAGCGAGGAAGGGAGGAGGAGGGCGAGGGGGGGGATAG
AAGGGGGGGGCCCAGACCCCGACCCAAAAAAATGGGGGGCCGGCGAAAAA
AAGAAATCCAACTAAAAATGGTACCAAGGAGGGGAGAGGGGGGAAAAANG
CAACCCGGGGGGGGTTTTTGCACGGAAAAAGGGGGACNAAAGGGGGAAAG
AAANGGAAAAACGGAAAGNAAAAAAAGAGGAAAGGAAAAAAAAAGGGGGA
CCCAAAGGGAAAGCGGGGGGGAAAAAAGGGGGAGACAAAAAGGCCCCAAG
AAAACCCCCCGAAAAGGAAGGCCCCAAAGGGAAAAAAAACGGCGGGGGGG
AAAAAAAGATAACGCCCAACCCCCAAAAAAGGGGGAAACAGGGGGGGAAA
AAAACAAAACGCCGTGGGAAAAAAAAAAGGGAGGGGAAAGGGCGGCGGGG
GGGGAAAAAAAGGTAACGCAGGGA
AAAAACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXTTTCACACGTGGA
GGTGACACTATAGATTTTCCAAAGAAAATCCAGATCTTTTAGTGTTCCTA
AGAACATGCCAACAACGAAACACCCATCCATTCTTTTGAATTGGTTTTGC
TGGGTCCTGAACTTTCAAGAGATAATTGGCCTGGACAGCTCAATGAACCC
AGCAGGGAGCCCCTCTCTTCTGGAATGAACATGAAGGTCAAGGTGAGTCT
TCCCTCCAGAATGGTCGTTTCTTCCACAGACAGGCTGGTGGTGGTTAACG
CTGATAGGAGCTGATGCTTTTTTTTTTAGCCCTAAGTCATTGAAAGAGCA
GCCAAACTCATGCTGATGATGTATAAAGCCTTATTGTTACCCTCTTGCCA
GAGGTCAACTTCATCGTGGTACTTCAGAGCTGAGTTATCTTCCGATGCTC
CATGATATTATGTGCCCTTATTCTCAAGGCTACTTCCGCCCCCGAAAGAT
TGATCTATTTTCCTCTTATATACTAGCTCCTCTTCCCCCTCCCCGTAATT
ATGTCTCTTATATTTGATTTTTAATTCATAAACTTCTCCCTTCTCCCCTT
CCCTTTCTCTCGCTTTTCTTACTTCCCTTCTCCTCTATAACTATCTTCCT
AAACTCTGTTATTTCTCTTTCTCCTTTCCTTTCCCTTTTTGTTCTTCATT
ATACTTTTTAATACTCCGCTCTTCTTCCTTTATTTACCATTCTTCTTTAT
ATTATTTCCTCCTTCATTCTATCTATTCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_k04.g1 MSMg01no448_k04.g1 CHROMAT_FILE:
MSMg01no448_k04.g1 PHD_FILE: MSMg01no448_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:58 2005
         (237 letters)



>mm_chr11_107939361_107939997
          Length = 637

 Score =  427 bits (221), Expect = e-124
 Identities = 233/237 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatcttttagtgttcctaagaacatgccaacaacgaaacacccatccattcttttgaat 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| 
Sbjct: 201 agatcttttagtgttcctaagaacatgccaacaacgaaacacccattcattcttttgaac 260

                                                                       
Query: 61  tggttttgctgggtcctgaactttcaagagataattggcctggacagctcaatgaaccca 120
           ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggttctgctgggtcctgaacttccaagagataattggcctggacagctcaatgaaccca 320

                                                                       
Query: 121 gcagggagcccctctcttctggaatgaacatgaaggtcaaggtgagtcttccctccagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcagggagcccctctcttctggaatgaacatgaaggtcaaggtgagtcttccctccagaa 380

                                                                    
Query: 181 tggtcgtttcttccacagacaggctggtggtggttaacgctgataggagctgatgct 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggtcgtttcttccacagacaggctggtggtggttaacgctgataggagctgatgct 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)