BAC Information

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BAC

Clone NameMSMg01-449E22
Chromosome11 (Build37)
Map Location 75,715,077 - 75,715,471
singlet/doubletsinglet
Overlap geneRph3al
Upstream geneTsr1, Srr, LOC100042478, Smg6, LOC100043429, LOC627835, Hic1, LOC668604, Ovca2, Dph1, Rtn4rl1, Rpa1, Smyd4, Serpinf1, LOC100043447, Serpinf2, Wdr81, LOC100042498, 2010305C02Rik, Prpf8, Rilp, Scarf1, Slc43a2, Pitpna, LOC654359, Pps, Myo1c, Crk, Ywhae, Doc2b
Downstream gene1700016K19Rik, 1500005K14Rik, Vps53, LOC668634, 2310047D13Rik, Gemin4, Dbil5, Glod4, Rnmtl1, Nxn, Timm22, Abr, LOC100043483, A830053O21Rik, Tusc5, Gosr1, Cpd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449E22.T7 (MSMg01no449_e22.b1)MSMg01-449E22.TJ (MSMg01no449_e22.g1)
ACCAG537312AG537313
length796785
length of high quality
(start - end)		398 (54 - 451)248 (80 - 327)
definitionCHROMAT_FILE: MSMg01no449_e22.b1 PHD_FILE: MSMg01no449_e22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:53 2005CHROMAT_FILE: MSMg01no449_e22.g1 PHD_FILE: MSMg01no449_e22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTCCTCTTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTCCCTTATGTCCTGACTGTCAAGGTGGATGGGCAAC
ATTCTCTAGAGTGACACCCACTGCTATAGGGGCCTAGGTTCCCAGGACTT
AGCAACCCGGAGAGCTGTGTGGAAGAGCGAGTCTCCCAAGACCAGAAGGT
GTATGTTTAAACAGGCTGCAGAGAGAGGATACTGGGAAGACCCTTGGCAT
TGGAAGGGTCCAAGCCAGACCTGTGTGGGTGGTGGACAAATCCTCAGGTG
CTCCTGGGGACACCAATGTCCCTCCAGCAAGATCCCTGCCAGTGTCTGTC
AGCCACAAGCTAATGAACATGCAGGTAGAAGGCACTGCAGTCCTGGAGCT
GTGGCCCTCTGTAATTGGGTCTGCGTGCATACACACACACACACTCCGGC
TGGCTGGGCTCATTTCCCTGGCAGTAGTGAAAAGGGAGAGGAGCTGACTG
GTTAATTAAAGAGGCCTGGTACTTCTAATTGTCTCCGATTCCAGTCANGC
CAGGAGCTTCCANCCTTGGGAAGCTGTGCCCGTTGCCGGATGACCATCTG
AAGCCCCAGAACGCCTTGTTCCCATCCTAAGGAACAAGTTGAGGTTTTTC
TTGGTCCCCCCCACTGGAATCCCTTATGGAGGCCCCGAAAGGACGCCGGC
ATACTTTAAACTTTGGGTGTGGGGTCCTAAAAACAAAGGGCTGGGGTTGC
CCCCCGTTTTTCCCCGCCCCTTCCAAAAATTTGGGGGGCGTTTAGG

NNNNACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCCCGAAAATACCAGGACAGCCAGGGAAACACAG
AGAGACCTTGTCTCAAAAACTCAAAACACATAAGGTGGATAGCTCCCATT
GTGCAATGGGATGTGATGTTGACCTCTGGTTTTCTCAGACACAAACACAT
GCACATACTCAAAGTCCTGTAGTAAGCTGCACCCCTCCCAAGGATGTCTA
GGCAGCACCTTATTGTTTCTGTTGCTGGGTTGAAACATCAGAAAGCAAGT
TGGGGAGGAAAGGGTCTTTTTGGCTTATTCTTCCATATCACTGTTCATCA
TCAAAGGAAGTCAGCACAGGAACTAACACATCACAGGAGCAACTTGGAGG
TAGGAGCTGATGCAGAGGCCATGAAAGAGCTGATGCAGAGGCCATGAAGA
GGTACTGCTTACTGGCTTGCTCATCAGGACTTGCTCAGCCTGCTTTCGTA
TAGACTCCAGGACCACCAGCTCCAGGATCACCCACAATGAGCTNGGCCTT
CCCAGATCTATTACTAATTAAGAAAATGTCCTGCAGGCTTGCCTACCAAT
TGATTTTATGGGGCAAATTTTTTTTTTTTTTTCTTTTCCNNAAATAACAC
ACCGGCCCGGTCCCCTCAACCAAATTTTTTTTTTTTTTTTTTTTTCCAAA
CGCCCGGAAAATACCCTTTTTGAAATTCATCTTAGTCTACCAATTTACCT
AAAAATCATTATATTTGCATATCTCATGCCAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_e22.b1 MSMg01no449_e22.b1 CHROMAT_FILE:
MSMg01no449_e22.b1 PHD_FILE: MSMg01no449_e22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:53 2005
         (398 letters)



>mm_chr11_75714874_75715671
          Length = 798

 Score =  756 bits (391), Expect = 0.0
 Identities = 394/395 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttcccttatgtcctgactgtcaaggtggatgggcaacattctctagagtgaca 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ggaattcttcccttaggtcctgactgtcaaggtggatgggcaacattctctagagtgaca 539

                                                                       
Query: 64  cccactgctataggggcctaggttcccaggacttagcaacccggagagctgtgtggaaga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 cccactgctataggggcctaggttcccaggacttagcaacccggagagctgtgtggaaga 479

                                                                       
Query: 124 gcgagtctcccaagaccagaaggtgtatgtttaaacaggctgcagagagaggatactggg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gcgagtctcccaagaccagaaggtgtatgtttaaacaggctgcagagagaggatactggg 419

                                                                       
Query: 184 aagacccttggcattggaagggtccaagccagacctgtgtgggtggtggacaaatcctca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 aagacccttggcattggaagggtccaagccagacctgtgtgggtggtggacaaatcctca 359

                                                                       
Query: 244 ggtgctcctggggacaccaatgtccctccagcaagatccctgccagtgtctgtcagccac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ggtgctcctggggacaccaatgtccctccagcaagatccctgccagtgtctgtcagccac 299

                                                                       
Query: 304 aagctaatgaacatgcaggtagaaggcactgcagtcctggagctgtggccctctgtaatt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 aagctaatgaacatgcaggtagaaggcactgcagtcctggagctgtggccctctgtaatt 239

                                              
Query: 364 gggtctgcgtgcatacacacacacacactccggct 398
           |||||||||||||||||||||||||||||||||||
Sbjct: 238 gggtctgcgtgcatacacacacacacactccggct 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 798
Length adjustment: 9
Effective length of query: 389
Effective length of database: 789
Effective search space:   306921
Effective search space used:   306921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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