Query= MSMg01no451_c02.b1 MSMg01no451_c02.b1 CHROMAT_FILE:
MSMg01no451_c02.b1 PHD_FILE: MSMg01no451_c02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:16 2005
(683 letters)
>mm_chr11_38862089_38863169
Length = 1081
Score = 1067 bits (552), Expect = 0.0
Identities = 559/562 (99%), Gaps = 2/562 (0%)
Strand = Plus / Minus
Query: 4 ggaattccaattattattatttttattgataagtgcagaagtagcaacactgcttggggt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggaattccaattattattatttttattgataagtgcagaagtagcaacactgcttggggt 501
Query: 64 ttattgcttctggcagagtatatagtctgacacagtcactggaggaaacacaagcatcct 123
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttattgcttctggcagag--tatagtctgacacagtcactggaggaaacacaagcatcct 443
Query: 124 ttctctccagaaggtgaattcattgtccaggtggcctaagggctttggactaaatcccat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttctctccagaaggtgaattcattgtccaggtggcctaagggctttggactaaatcccat 383
Query: 184 actcctgtgtgtgcagaaatttaaactcttactgggccactgttctaagtcaggacattt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 actcctgtgtgtgcagaaatttaaactcttactgggccactgttctaagtcaggacattt 323
Query: 244 tgcccaaatcagtgacatattttattaacatcacatgtgagctactgtaggctcttaaaa 303
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tccccaaatcagtgacatattttattaacatcacatgtgagctactgtaggctcttaaaa 263
Query: 304 tatacagtcccaaagctgtaaagtaaaatagcattgtcaaaactattttctaaaatgtca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tatacagtcccaaagctgtaaagtaaaatagcattgtcaaaactattttctaaaatgtca 203
Query: 364 ttaataattataattattataatagaaaaaagattccaatatcataatttattctttatt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ttaataattataattattataatagaaaaaagattccaatatcataatttattctttatt 143
Query: 424 ttgatccacctctattgccccagtgttctggggttatagcacaatttaatttcttcacca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 ttgatccacctctattgccccagtgttctggggttatagcacaatttaatttcttcacca 83
Query: 484 ttatgcatctatgatttaatatggagatgtaatatatatatttcttccatataatgtagg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 ttatgcatctatgatttaatatggagatgtaatatatatatttcttccatataatgtagg 23
Query: 544 aagttctttgcttgaatcttgt 565
||||||||||||||||||||||
Sbjct: 22 aagttctttgcttgaatcttgt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1081
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1071
Effective search space: 720783
Effective search space used: 720783
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no451_c02.g1 MSMg01no451_c02.g1 CHROMAT_FILE:
MSMg01no451_c02.g1 PHD_FILE: MSMg01no451_c02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:16 2005
(613 letters)
>mm_chr11_38699125_38700137
Length = 1013
Score = 1083 bits (560), Expect = 0.0
Identities = 606/630 (96%), Gaps = 17/630 (2%)
Strand = Plus / Plus
Query: 1 aactaaactgtcctcatgaaatgctttaagaaaatgaataatatcgaagagaacaaaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 aactaaactgtcctcatgaaatgctttaagaaaatgaataatatcgaagagaacaaaata 243
Query: 61 cacattactcaaccaacacaatatttcatatctctaaaaggcctcatttttttt----at 116
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 244 cacattactcaaccaacacaatatttcatatctctaaaaggcctctttttttttttttat 303
Query: 117 tgatgtgaaatgagcctttggagttgccagtggcttaaattaactataagatagcttatt 176
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 304 tgatgtgaaatgagcctttggagtcgccagtggcttaaattaactataagatagcttatt 363
Query: 177 aaatatacttaaatataagatcatgtataatgatatctataatgctacattcactatttt 236
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 364 aaatatacttaaatataagatcatgtataacgatatctataatgctacattcactatttt 423
Query: 237 actacctcatatttcatgatagtgtcctacttatattctgtgacgtgacatgggaaaaaa 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 actacctcatatttcatgatagtgtcctacttatattctgtgacgtgacatgggaaaaaa 483
Query: 297 -ttagcaaatcaagagtacaagaagctaggatttagctgggcgtggtggcgcacaccttt 355
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 484 attagcaaatcaagagtacaagaagctaggatttagctgggcatggtggcacacaccttt 543
Query: 356 gatcccagcactagggaggcagagtcaggtggatttctgggttcgaggccagcctggtct 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gatcccagcactagggaggcagagtcaggtggatttctgggttcgaggccagcctggtct 603
Query: 416 acagagtgagttccaggacagccagcagggctatacagagaaaccctgtctcaaaaaaaa 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 acagagtgagttccaggacagccagcagggctatacagagaaaccctgtctcaaaaaaaa 663
Query: 476 caaaaaaaaaaaaa---gaagctaagatttaaga---------tcagtaaattctttcca 523
|||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 664 caaaaaaaaaaaaaaaagaagctaagatttaagagatttaagatcagtaaattctttcca 723
Query: 524 aatcacacattaagtaagaaagtatatgttgaatgtaggatttttaattccataagtttc 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 aatcacacattaagtaagaaagtatatgttgaatgtaggatttttaattccataagtttc 783
Query: 584 tttcttatgtttaaatatgactctgttgtt 613
|| | |||||||||||||||||||||||||
Sbjct: 784 ttacatatgtttaaatatgactctgttgtt 813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space: 604809
Effective search space used: 604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
