BAC Information

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BAC

Clone NameMSMg01-451E02
Chromosome11 (Build37)
Map Location 95,009,402 - 95,010,062
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039440, Tob1, Wfikkn2, 3300001P08Rik, Ankrd40, Abcc3, Cacna1g, Spata20, Epn3, Mycbpap, Rsad1, BC018371, Chad, Lrrc59, Eme1, Mrpl27, Xylt2, OTTMUSG00000002038, Cdc34-ps, A430060F13Rik, Tmem92, LOC100039410, LOC544807, LOC544808, LOC665174, LOC432591, LOC100039739, Col1a1, Sgca, Hils1, Ppp1r9b, Samd14, Pdk2, Itga3, Dlx3, Dlx4
Downstream geneLOC100039437, Tac4, Myst2, 5730593F17Rik, Slc35b1, Spop, LOC100039483, Nxph3, Ngfr, Phb, 1110035M17Rik, Zfp652, EG665273, Phospho1, Abi3, Gngt2, LOC100040014, B4galnt2, Igf2bp1, LOC100040040, Gip, Snf8, Ube2z, Atp5g1, Ndp52, Ttll6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451E02.T7 (MSMg01no451_e02.b1)MSMg01-451E02.TJ (MSMg01no451_e02.g1)
ACCAG538789AG538790
length729744
length of high quality
(start - end)
658 (56 - 713)288 (84 - 371)
definitionCHROMAT_FILE: MSMg01no451_e02.b1 PHD_FILE: MSMg01no451_e02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:26 2005CHROMAT_FILE: MSMg01no451_e02.g1 PHD_FILE: MSMg01no451_e02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATATGAAGCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTGCAGTGTTGCCGCAGAAGGACAGGTCCAACTTTC
TTTCAGGATGCTCCTGAGCACACAGGGAAGCTCAGAGGAGGCCTTCACCA
GGGACCCTGCTTTGGATGTGATCCAAAGAGTCTACCAGGACACTCACCTC
TGCCCTTCCTCCAGCAGGGGCCCAGCACTGAAAGGATTCTGGTTACCTGC
CCCCCTGGAAGTGTCTCCCATCATCCTCTCCATTCTCGCTAGAAAGCAAA
TCTGCCCTCACAGCCAGCCCTGCCTCAAAGCACATCTTCTTGCTTTGAAT
CTTACAGCGTGAGAGAGAAGCCATCCCTGGAAACACCACAGCAGACTCCC
TTCTAAAGAACAGCACAGCCAGGCTGTGGTGGCACGTGCGCCTTTCATCC
CTGCACCCGGGAGGCAGAGACAGGTGGATCTCTGAGTTCAGTTCCAGGTC
AGCCTGGTCTAGTTCCAGGGTAGCCAGGGCTAAACAGAGAGACCCTGTCT
TGAAAGATTGAAAGAGCAGAACAGTGCTAGAGACAGAAAGACTTGGAAAG
CAACATCTTCAGCTGCTCATCGCCCCAGCTCTAAGGAGGAAGGCATACTG
AAACCCGGGGAAAGGTGGTCTCACATGAAAAGAACATTTCCCTACCAAAC
AAACTCACACCTTTCCTTCAGCCAACCTG
GAAGTTCTCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGCCAGCCTTGGCTA
TACAGTGAGGCTCCATCTCCAAAGGGATGTAGCTCAGTGGTAGAAGACTT
ACCTAGCATGTGCCAAGTCAATCCCCAACACTAAAATTAATTTTCAAAGA
ACAGACCCAGGGCCAGGCATGGTGGTGCACACCTTTAATCTCAGAGCTCA
GAAGGCAGCCATAACTGTTCTCTGAGTTTGGGGCCAGCCTGGTCTACATA
GTGAGTTCGAGGTCAGCTAGAAATGCACACACAGTAAAACTCCGTCTGAA
GGAGAAGGAGAAGGAGGATNATTATTNTNTNTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTNTTTNTTTTNTNTTTTTTTTTTTTTTTTTTTNTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTNTNTTTTTTTTTTTTT
TTTTTTTNTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTNNTTTTTTT
TGTTNNNTTTTTTTTTTTTNTTTTTTTTTTTTTGTGGTGTNTTTTTGGTG
TTTTTTTTTTGTTTGTTTTTGTTGTTGGTTTTTGGTGGTGTTTTGGTTGT
TGTTGTGTGTGTTTTTTTTGTGTGGTTTTGTTTTTGGTGTTTGGTTTTGT
GTTTTTTGGTGGGTTTTTTTTTGTTTGTTGTGTTGGTGTGTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_e02.b1 MSMg01no451_e02.b1 CHROMAT_FILE:
MSMg01no451_e02.b1 PHD_FILE: MSMg01no451_e02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:26 2005
         (658 letters)



>mm_chr11_95009305_95010362
          Length = 1058

 Score = 1193 bits (617), Expect = 0.0
 Identities = 647/661 (97%), Gaps = 7/661 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgcagtgttgccgcagaaggacaggtccaactttctttcaggatgctcctgagc 64
           ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 gaattctgcagggttaccgcagaaggacaggtccaactttctttcaggatgctcctgagc 699

                                                                       
Query: 65  acacagggaagctcagaggaggccttcaccagggaccctgctttggatgtgatccaaaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 acacagggaagctcagaggaggccttcaccagggaccctgctttggatgtgatccaaaga 639

                                                                       
Query: 125 gtctaccaggacactcacctctgcccttcctccagcaggggcccagcactgaaaggattc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 gtctaccaggacactcacctctgcccttcctccagcaggggcccagcactgaaaggattc 579

                                                                       
Query: 185 tggttacctg-------cccccctggaagtgtctcccatcatcctctccattctcgctag 237
           ||||||||||       |||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 578 tggttacctgccccccccccccccggaagtgtctcccatcatcctctccattcacgctag 519

                                                                       
Query: 238 aaagcaaatctgccctcacagccagccctgcctcaaagcacatcttcttgctttgaatct 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 aaagcaaatctgccctcacagccagccctgcctcaaagcacatcttcttgctttgaatct 459

                                                                       
Query: 298 tacagcgtgagagagaagccatccctggaaacaccacagcagactcccttctaaagaaca 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tacagcgtgagagagaagccatccctggaaacaccacagcagactcccttctaaagaaca 399

                                                                       
Query: 358 gcacagccaggctgtggtggcacgtgcgcctttcatccctgcacccgggaggcagagaca 417
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 398 gcacagccaggctgtggtggcacgtgcgcctttcatccctgcacccgggaggcagagata 339

                                                                       
Query: 418 ggtggatctctgagttcagttccaggtcagcctggtctagttccagggtagccagggcta 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ggtggatctctgagttcagttccaggtcagcctggtctagttccagggtagccagggcta 279

                                                                       
Query: 478 aacagagagaccctgtcttgaaagattgaaagagcagaacagtgctagagacagaaagac 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 aacagagagaccctgtcttgaaagattgaaagagcagaacagtgctagagacagaaagac 219

                                                                       
Query: 538 ttggaaagcaacatcttcagctgctcatcgccccagctctaaggaggaaggcatactgaa 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 ttggaaagcaacatcttcagctgctcatcgccccagctctaaggaggaaggcatactgaa 159

                                                                       
Query: 598 acccggggaaaggtggtctcacatgaaaagaacatttccctaccaaacaaactcacacct 657
           |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 158 acccagggaaaggtggtctcacatcaaaagaacatttccctaccaaacaaactcacacct 99

            
Query: 658 t 658
           |
Sbjct: 98  t 98


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)