Query= MSMg01no451_f15.b1 MSMg01no451_f15.b1 CHROMAT_FILE:
MSMg01no451_f15.b1 PHD_FILE: MSMg01no451_f15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:34 2005
(665 letters)
>mm_chr11_57478108_57479179
Length = 1072
Score = 1062 bits (549), Expect = 0.0
Identities = 639/675 (94%), Gaps = 14/675 (2%)
Strand = Plus / Plus
Query: 1 agtaataaaatataaaatcccaccgtgagtagaagtgagtgaatgaaagagaaaggagga 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 agtaataaaatataaaatcccaccgtgcgtagaagtgagtgaatgaaagagaaaggagga 260
Query: 61 gctgggaggaggaaaagaagtcttaagtccagaggcggaggcaggaaactgcggagacag 120
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 gctgggaggaggaagagaagtcttaagttcagaggcggaggcaggaaactgcggagacag 320
Query: 121 gcacctgccagcaggcactgtggccctgagtgggcgtggagctgtcgcttcctgtggagg 180
|||||||||||||||||||||| ||||| ||||| ||||||| || |||||||||||||
Sbjct: 321 gcacctgccagcaggcactgtgaccctgggtgggtgtggagccatctcttcctgtggagg 380
Query: 181 tatctctacatc-----aggtgttgtgctatgctgtcaggttccaccatggggtccatct 235
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatctctacatcagggaaggtgctgtgctatgctgtcaggttccaccatggggtccatct 440
Query: 236 gcccacaccccccct--ttcttgtgatggtttttttgattgtatgaagccaggtggtctt 293
||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 gcctacaccccccctccttcttgtgatgatttttttgattgtatgaagccaggtggtctt 500
Query: 294 agatttacagtctgatttccaattttgtagattgctctttctctgttaaaataaataaat 353
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 501 agatttacagtctgatttccaactttgtagattgctctttctctgttaaaagaaataaat 560
Query: 354 aaaacccactattttcctgttgcccacctgttcctgaacacactgtatttcccttctttg 413
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 561 aaaacccactattttcctgttgcccacctgttcttgaacacactgtatttcccttttttg 620
Query: 414 attatttattgctatctaaaaaattactctcacacatggaagcttaacccacaaatattt 473
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 621 attatttattgctatctaaaat-ttactctcacacatggaagcttaacccacaaatattt 679
Query: 474 atttgatctgggtctgggtgggtggagaattctggctctgctggaagattctagttctgg 533
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 680 atttgatctgggtctgggtgggtcgaggattctggctctgctggaagattctagttctgg 739
Query: 534 gtcctaagaaattacagttaaggggctggctcagtacaat---tactttaaactgggcgt 590
||||||||||||||||||||||||| |||||||||| | ||||||||| |||||||
Sbjct: 740 gtcctaagaaattacagttaaggggatggctcagta---tgcctactttaaattgggcgt 796
Query: 591 ggccatgggtatttgtagtcccagcacggggagggtggaggcagaagaattagaagctca 650
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 797 ggccatgggtatttgtagtcccagcacggggagggtggaggcaaaagaattagaagctca 856
Query: 651 gagccattcctggtg 665
|||||||||||||||
Sbjct: 857 gagccattcctggtg 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1072
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1062
Effective search space: 695610
Effective search space used: 695610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no451_f15.g1 MSMg01no451_f15.g1 CHROMAT_FILE:
MSMg01no451_f15.g1 PHD_FILE: MSMg01no451_f15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:34 2005
(543 letters)
>mm_chr11_57625273_57626215
Length = 943
Score = 899 bits (465), Expect = 0.0
Identities = 488/499 (97%), Gaps = 6/499 (1%)
Strand = Plus / Minus
Query: 45 aggctaagggtgtctccatgtgaccccttcagggtgtattgaagaaccacaccaggctgg 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 943 aggctaagggtgtctccatgtgaccccttcagggtgtattgaagaaccacaccaggctgg 884
Query: 105 atcagagacaggaagccataccacttctgggcttgaaattccagttctgtcaagaagcac 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 atcagagacaggaagccataccacttctgggcttgaaattccagttctgtcaagaagcac 824
Query: 165 caagtagagagaccatgctgagccatcacagatgagtgtgtgtgtgtgtgcgcgcgcgcg 224
||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 823 caagtagagagaccatgctgagccatcacagatgagtgtgtgtgtgt------gcgcgcg 770
Query: 225 tgtgtgcgcacacgcatgcatgtgtgagggaggcaggcatggccggtgatatgaaaatac 284
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 tgtgtgcgcacgcgcatgcatgtgtgagggaggcaggcatggccggtgatatgaaaatac 710
Query: 285 aagcagcctagataagcactgctctctcaataatccctgctgctccctaagccaggcttg 344
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 709 aagcagcctagataagcactactctctcaataatccctgctgctccctaagccaggcttg 650
Query: 345 ggcctttcttgaaggcagtgggttcttggccatgactaggcagggagatgggaggccagg 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 ggcctttcttgaaggcagtgggttcttggccatgactaggcagggagatgggaggccagg 590
Query: 405 ggctgctgctccaatgacactgcacacttcatgacacagcatgttcaaatagctttgcct 464
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 589 gactgctgctccaatgacacagcacacttcatgacacagcatgttcaaatagctttgcct 530
Query: 465 tttctctcaggcgatctgttgtgaaagggtgaaaatgatagccctggtctctacttctcc 524
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 529 tttctctcaggcgatctgttgtgaaagggtgaaaatgatagcccaggtctctacttctcc 470
Query: 525 aaggctgctggcatcagag 543
|||||||||||||||||||
Sbjct: 469 aaggctgctggcatcagag 451
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
