Query= MSMg01no451_j20.b1 MSMg01no451_j20.b1 CHROMAT_FILE:
MSMg01no451_j20.b1 PHD_FILE: MSMg01no451_j20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:55 2005
(705 letters)
>mm_chr11_111372843_111373947
Length = 1105
Score = 1187 bits (614), Expect = 0.0
Identities = 674/702 (96%), Gaps = 13/702 (1%)
Strand = Plus / Plus
Query: 4 ggaattcattaattattctcatttcttgatacagagactctttctttgtagtccaggctg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 ggaattcattaattattctcatttcttgatacagagactctttctttgtagtccaggctg 276
Query: 64 gcacttaactccttgtggaattaaagctcatctcaaacgaatgatcctcctgcctcagcc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gcacttaactccttgtggaattaaagctcatctcaaacgaatgatcctcctgcctcagcc 336
Query: 124 tctcgtgtgctataacgacaagcagatacaattccctcagtgaacataggttctcactct 183
|||| ||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 337 tctcatgt-------------gcagatacaattccctcagtgaacacaggttctcactct 383
Query: 184 ggttctctatgttttcttcccaataatttgttttctgggtactgctgaggtcgttgctcc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggttctctatgttttcttcccaataatttgttttctgggtactgctgaggtcgttgctcc 443
Query: 244 cgttatcttcagagaacgtccaggacacaacgaagtctctgtattgtgtttaatgtcctt 303
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 444 cgttatcttcagagaacgtccaggacacaatgaagtctctgtattgtgtttaatgtcctt 503
Query: 304 ttccccattattcagtggagtagtacttggaagaagtcagttcaattgcaggccaattct 363
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 504 ttccccattattcagtggagtagtacttggaagaagtcagttcaattgcaggccgattct 563
Query: 364 ggaactccttagacctttgtgatgtgagccctgtttttttcttttgaagaaactcattgt 423
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggaactccttagacccttgtgatgtgagccctgtttttttcttttgaagaaactcattgt 623
Query: 424 tcctgtgatcattgctgcagagagagagagagagagagagagagagagggaaagtgagag 483
|||||||||||||||||||||||||||||||| || || ||||||||| |||||||||||
Sbjct: 624 tcctgtgatcattgctgcagagagagagagagggaaagtgagagagagagaaagtgagag 683
Query: 484 agagtggggaagctttcagccaggatttatttactcttctaagtcttacttgtgataatc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 agagtggggaagctttcagccaggatttatttactcttctaagtcttacttgtgataatc 743
Query: 544 aaacccaatgtaaatcaggatgctggccataaagtaggggcatgacactagaacaataac 603
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 744 aaacccaatgtaaatcaggatgctggccataaagtatgggcatgacaccagaacaataac 803
Query: 604 aataaacattgtaagtcactaagaagcatccgagaggagggtgcatctaccgcagatgca 663
|||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||
Sbjct: 804 aataaacattgtaagtcactaagaagcatccgagagaagggcacatctaccacagatgca 863
Query: 664 gaccaaagcaagcgcatttagcttgcttgcttaccttctagc 705
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 gaccaaagcaagcgcatttagcttgcttgcttaccttctagc 905
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1105
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1095
Effective search space: 761025
Effective search space used: 761025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no451_j20.g1 MSMg01no451_j20.g1 CHROMAT_FILE:
MSMg01no451_j20.g1 PHD_FILE: MSMg01no451_j20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:55 2005
(581 letters)
>mm_chr11_111521401_111522381
Length = 981
Score = 903 bits (467), Expect = 0.0
Identities = 483/489 (98%), Gaps = 2/489 (0%)
Strand = Plus / Minus
Query: 1 catgaccatttattgtcttcattgaccagttgtgagtatttacgtttgtatattaataat 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 489 catgaccatttattgtcttcattgaccagttgtgagtatttatgtttgtatattaataat 430
Query: 61 ggaagaggaagtcatgaattatacagggggtgttggtagggatatgggagaagttggagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ggaagaggaagtcatgaattatacagggggtgttggtagggatatgggagaagttggagg 370
Query: 121 gcagagaagaagtataaatgatgccattgtgtctagatttctcaaataatgatgtaagca 180
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 369 gcagagaagaagtataaatgatgccattgtgtctcgatctctcaaataatgatgtaagca 310
Query: 181 tacaccatgtcctgtgcctggtaaattttcagttttaaacaagattgtctagtgagtata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tacaccatgtcctgtgcctggtaaattttcagttttaaacaagattgtctagtgagtata 250
Query: 241 taatgtggcagaacaatgggcagtgagaataactagatggcatatgtatatgtatatgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 taatgtggcagaacaatgggcagtgagaataactagatggcatatgtatatgtatatgat 190
Query: 301 gtatatgtatatgcatatgcatatgtatatgtatgtatgcatatgtgtgtgt--atgtgt 358
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 189 gtatatgtatatgcatatgcatatgtatatgtatgtatgcatatgtgtgtgtgtatgtgt 130
Query: 359 acatgtatatatgttagctgaatagtacaggtattgtgggatctgctcgagaatctgtgg 418
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 129 acatgtatatatgttagctgaatagtacaggtattgtgggatctgcttgagaatctgtgg 70
Query: 419 agagggatgtgggaagagtgtaatagccacaaaggatggagaaaatcaagaaacaagacc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 agagggatgtgggaagagtgtaatagccacaaaggatggagaaaatcaagaaacaagacc 10
Query: 479 ctctaaatc 487
|||||||||
Sbjct: 9 ctctaaatc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space: 554441
Effective search space used: 554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
