BAC Information

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BAC

Clone NameMSMg01-451L06
Chromosome11 (Build37)
Map Location 47,492,635 - 47,689,224
singlet/doubletdoublet
Overlap geneLOC100039647
Upstream geneTimd2, LOC620678, Havcr1, Timd4, Sgcd, LOC628753
Downstream geneLOC192895, Hn1l-ps2, LOC667163, LOC432554, Gnb2l1, Trim41, LOC100039945, Trim7, Irgm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451L06.T7 (MSMg01no451_l06.b1)MSMg01-451L06.TJ (MSMg01no451_l06.g1)
ACCAG539130AG539131
length752754
length of high quality
(start - end)		679 (54 - 732)653 (84 - 736)
definitionCHROMAT_FILE: MSMg01no451_l06.b1 PHD_FILE: MSMg01no451_l06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:03 2005CHROMAT_FILE: MSMg01no451_l06.g1 PHD_FILE: MSMg01no451_l06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,688,550 - 47,689,224)(47,492,635 - 47,493,287)
sequence
NTTTTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTGTGTCCATAAAGCAAAGGCACTTCTATTTCAGGC
AGTCTTGTCGATGGGTTTGTTTTGATTTTCCTTTCTAGATGTCTGAGTAA
TTAATCACCAGAGGATTCCTTTCTCTGTCCTTTACCAAGACACATCAGTC
CATGATAGAACATGGTAGTGGCAGATACTTGTGGTCAGTAGTCACTTTTC
ATGATCTTAGAGTTACAGAGATGCCCATGTCTTGATAGAAAGTGTTTCCC
ATACTCTTGATGTACAGGTACAGACAGTATAAATAGTCCTTCCACTGATG
GCTCTGTACTACATAAATGAATCATTTTTTGCTGCATGGATAGTGGCTTA
TTTTGCCAGTTTAGATTCCATTGTGTCTTTTTGTACCAACACAGTGGTCA
TGTTTGGAGTTTGTGGTGATACTGTTATAGTGTTAACTGCTATGGCACTA
CAATCTCTGTTTCCTAGTTAGAATCTTAGTTCTACCATGGTTACTCCAGT
ACCATCCTGTGAAAACGAATTTGCCATCATTGCCCACCATTCTCTACCCA
TGTTGATCATCTTGCCTTTGTCTTCAGTTGTCAGAGTTCCTTGGGCGCTC
CTCTTCATTTGAACATCAGTTGCTATCACAGTCTAGAACATGATAGGATA
TCAGAGGTTAAATGGAGGCTCCCTCGACCTGGGTAGGGATCCTGGATAAG
GA

ATTTTTTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGAGGAAATATTTAGA
GCAATAAGAAGGATTGACATATAGATATGTAAATGGATACACACTCTCAT
TATCCATTCAAAATGTACCCAGGATTCATTTTGATCCAGCATGAAACCAA
AGCAACAGTTTTCATACTGAAATTCCTGTACTTAGGAGGCATATCCTACT
ACATAGGAAAGCAACAGACTGGGGCAAGAGTCAGAAGGAAAGATAATAGA
GTAGTTTGAATAACTTATGTAGTCTGGGCCTTAGAGGATATATCTAGGTG
TTTGGTACCTGGCCCAGGAATAATTTGGGCAAGATCTCAGTAGTCTAGGG
AATAGGAGTTGGAAAAAGGATGTGGGTGAAGTAGAAGGTCTGTTTCCTTT
TCATATGAATGGATGTTGACTAAGAATTAGTTATCCACGAGAGATACAGT
TCCTAGAGCATTAACAAGGGCACAGAACAATTATCAGAAACATAAAGCAT
GAAGGCATGATAAGTTAAGTGCAGAGAGTGTGATTTGAATCATGGAGTAT
CCTCAAGATTCTATTGTCCAGCTGAGGCCTCAGACATGGTACAGCAGAGA
CAATCCATCTTTGTCCTGCTCTTCTTGACCCACAGGACCAAGAACATACT
TAGTAGATACTTAATCTCACTAATTTTGGGAGCTGTTTGTTTTGCACCAG
CAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_l06.b1 MSMg01no451_l06.b1 CHROMAT_FILE:
MSMg01no451_l06.b1 PHD_FILE: MSMg01no451_l06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:03 2005
         (679 letters)



>mm_chr11_47688346_47689424
          Length = 1079

 Score = 1243 bits (643), Expect = 0.0
 Identities = 667/675 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttgtgtccataaagcaaaggcacttctatttcaggcagtcttgtcgatgggtt 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 gaattctttgtggccataaagcaaaggcacttctatttcaggcagtcttgtcgatgggtt 820

                                                                       
Query: 65  tgttttgattttcctttctagatgtctgagtaattaatcaccagaggattcctttctctg 124
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 819 tgttttgattttcctttctagatgtctgagtaattaatcatcagaggattcctttctctg 760

                                                                       
Query: 125 tcctttaccaagacacatcagtccatgatagaacatggtagtggcagatacttgtggtca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 tcctttaccaagacacatcagtccatgatagaacatggtagtggcagatacttgtggtca 700

                                                                       
Query: 185 gtagtcacttttcatgatcttagagttacagagatgcccatgtcttgatagaaagtgttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 gtagtcacttttcatgatcttagagttacagagatgcccatgtcttgatagaaagtgttt 640

                                                                       
Query: 245 cccatactcttgatgtacaggtacagacagtataaatagtccttccactgatggctctgt 304
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 ctcatactcttgatgtacaggtacagacagtataaatagtccttccactgatggctctgt 580

                                                                       
Query: 305 actacataaatgaatcattttttgctgcatggatagtggcttattttgccagtttagatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 actacataaatgaatcattttttgctgcatggatagtggcttattttgccagtttagatt 520

                                                                       
Query: 365 ccattgtgtctttttgtaccaacacagtggtcatgtttggagtttgtggtgatactgtta 424
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 519 ccattgtgtctttttgtaccaacaccgtggtcatgtttggagtttgtggtgatactgtta 460

                                                                       
Query: 425 tagtgttaactgctatggcactacaatctctgtttcctagttagaatcttagttctacca 484
           |||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 459 tagtattaactgctatggcactacaatctctgtttcctggttagaatcttagttccacca 400

                                                                       
Query: 485 tggttactccagtaccatcctgtgaaaacgaatttgccatcattgcccaccattctctac 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tggttactccagtaccatcctgtgaaaacgaatttgccatcattgcccaccattctctac 340

                                                                       
Query: 545 ccatgttgatcatcttgcctttgtcttcagttgtcagagttccttgggcgctcctcttca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ccatgttgatcatcttgcctttgtcttcagttgtcagagttccttgggcgctcctcttca 280

                                                                       
Query: 605 tttgaacatcagttgctatcacagtctagaacatgataggatatcagaggttaaatggag 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tttgaacatcagttgctatcacagtctagaacatgataggatatcagaggttaaatggag 220

                          
Query: 665 gctccctcgacctgg 679
           ||| |||||||||||
Sbjct: 219 gcttcctcgacctgg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no451_l06.g1 MSMg01no451_l06.g1 CHROMAT_FILE:
MSMg01no451_l06.g1 PHD_FILE: MSMg01no451_l06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:03 2005
         (653 letters)



>mm_chr11_47492435_47493487
          Length = 1053

 Score = 1201 bits (621), Expect = 0.0
 Identities = 645/653 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaggaaatatttagagcaataagaaggattgacatatagatatgtaaatggatacaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgaggaaatatttagagcaataagaaggattgacatatagatatgtaaatggatacaca 260

                                                                       
Query: 61  ctctcattatccattcaaaatgtacccaggattcattttgatccagcatgaaaccaaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctcattatccattcaaaatgtacccaggattcattttgatccagcatgaaaccaaagc 320

                                                                       
Query: 121 aacagttttcatactgaaattcctgtacttaggaggcatatcctactacataggaaagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacagttttcatactgaaattcctgtacttaggaggcatatcctactacataggaaagca 380

                                                                       
Query: 181 acagactggggcaagagtcagaaggaaagataatagagtagtttgaataacttatgtagt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 381 acagactggggcaagagtcagaaggaaagataatagagtagtttgaataactcatgtggt 440

                                                                       
Query: 241 ctgggccttagaggatatatctaggtgtttggtacctggcccaggaataatttgggcaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgggccttagaggatatatctaggtgtttggtacctggcccaggaataatttgggcaag 500

                                                                       
Query: 301 atctcagtagtctagggaataggagttggaaaaaggatgtgggtgaagtagaaggtctgt 360
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 atctcagtagtctagggaataggagttggaaaatggatgtgggtgaagtagaaggtctgt 560

                                                                       
Query: 361 ttccttttcatatgaatggatgttgactaagaattagttatccacgagagatacagttcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttccttttcatatgaatggatgttgactaagaattagttatccacgagagatacagttcc 620

                                                                       
Query: 421 tagagcattaacaagggcacagaacaattatcagaaacataaagcatgaaggcatgataa 480
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 621 tagagcattaacaagggcacagaacaatcatcagaaacataaagcatgaaggcatgataa 680

                                                                       
Query: 481 gttaagtgcagagagtgtgatttgaatcatggagtatcctcaagattctattgtccagct 540
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gttaagttcagagagtgtgatttgaatcatggagtatcctcaagattctattgtccagct 740

                                                                       
Query: 541 gaggcctcagacatggtacagcagagacaatccatctttgtcctgctcttcttgacccac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaggcctcagacatggtacagcagagacaatccatctttgtcctgctcttcttgacccac 800

                                                                
Query: 601 aggaccaagaacatacttagtagatacttaatctcactaattttgggagctgt 653
           | || ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 801 aagatcaagaacatacttagtagatacttaatctcactaattttaggagctgt 853


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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