Query= MSMg01no451_p13.b1 MSMg01no451_p13.b1 CHROMAT_FILE:
MSMg01no451_p13.b1 PHD_FILE: MSMg01no451_p13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:24 2005
(712 letters)
>mm_chr11_85867190_85868300
Length = 1111
Score = 926 bits (479), Expect = 0.0
Identities = 494/499 (98%), Gaps = 1/499 (0%)
Strand = Plus / Minus
Query: 5 gaattctgggttcttcgcaatttttttggagaaaagcagcattggtctgatgtagttgaa 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gaattctgggttctt-gcaatttttttggagaaaagcagcattggtctgatgtagttgaa 442
Query: 65 ttctaaaatatgaattgtatttcaactaattgattagctctgatatcagccttttggtaa 124
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 ttctaaaatatgaattgtatttcaactaattgattagctatgatatcagccttttggtaa 382
Query: 125 atctcattactatcctgcaacaaaattaattatcttgtttacttatatccaaagaaagaa 184
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 atctcattactatcctgcaacaaaattaattatcttgtttacttacatccaaagaaagaa 322
Query: 185 tttatttgtcatatcttgtatatttaaactatatgatatacaattcattatttaatttat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttatttgtcatatcttgtatatttaaactatatgatatacaattcattatttaatttat 262
Query: 245 gatatacaattaattgttctatatattgtgacagttcaaaaataagaatagctctatgct 304
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatatacaattaattgtcctatatattgtgacagttcaaaaataagaatagctctatgct 202
Query: 305 gggtagtggtggtacatttaattccagcactcaggaagcagaggcaggctctatgagttt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggtagtggtggtacatttaattccagcactcaggaagcagaggcaggctctatgagttt 142
Query: 365 gaggccagcctggtctacagattgagttccaggacagccagttacacagagaaaccctgt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 gaggccagcctggtctacagattgagttccaggacagccagttacacagagaaaccctgt 82
Query: 425 cttgaaaaacaaaaacaacaacaacaaaatagctttccatatgactgccatggatctatc 484
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 cttgaaaaacaaaaccaacaacaacaaaatagctttccatatgactgccatggatctatc 22
Query: 485 cactcatccagctaacata 503
|||||||||||||||||||
Sbjct: 21 cactcatccagctaacata 3
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 712
Length of database: 1111
Length adjustment: 10
Effective length of query: 702
Effective length of database: 1101
Effective search space: 772902
Effective search space used: 772902
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no451_p13.g1 MSMg01no451_p13.g1 CHROMAT_FILE:
MSMg01no451_p13.g1 PHD_FILE: MSMg01no451_p13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:24 2005
(651 letters)
>mm_chr11_85649929_85650979
Length = 1051
Score = 1259 bits (651), Expect = 0.0
Identities = 651/651 (100%)
Strand = Plus / Plus
Query: 1 tatacaagcttgtttgtttatttttaattttttgcgaacttgcccttctgggcctgtgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatacaagcttgtttgtttatttttaattttttgcgaacttgcccttctgggcctgtgag 260
Query: 61 tggtgcaatgacttgactttgcctagacctgcggacttgggtgtgcgggcactgggtttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggtgcaatgacttgactttgcctagacctgcggacttgggtgtgcgggcactgggtttg 320
Query: 121 tctgtgttcagtgaggaatagtttaacctttgtgactatgtgagcctttatgcttgctcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgtgttcagtgaggaatagtttaacctttgtgactatgtgagcctttatgcttgctcc 380
Query: 181 ggcctgtatgtgcgtgttgagggattatttcttgaataaggcttttggagatgcaaagat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcctgtatgtgcgtgttgagggattatttcttgaataaggcttttggagatgcaaagat 440
Query: 241 cccgtcattttcctagatgcttgcctgccggcctcacctctctgcgtactaccccaggcg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccgtcattttcctagatgcttgcctgccggcctcacctctctgcgtactaccccaggcg 500
Query: 301 ggtggcacgacccaacccccaaccccggctctctactgtgtagcttgtagccgctgacct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtggcacgacccaacccccaaccccggctctctactgtgtagcttgtagccgctgacct 560
Query: 361 cggggtgcccccggccagccttgaagaatcaggtcttgacttagtaccgcttcctcggcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cggggtgcccccggccagccttgaagaatcaggtcttgacttagtaccgcttcctcggcc 620
Query: 421 ccgcagattacacagctgaagatcgacaacaacccctttgccaagggcttccgggacact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccgcagattacacagctgaagatcgacaacaacccctttgccaagggcttccgggacact 680
Query: 481 gggaacggccgtcgggagaaaaggtgagacaggagccgatggcctgttgtgcgtacccct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gggaacggccgtcgggagaaaaggtgagacaggagccgatggcctgttgtgcgtacccct 740
Query: 541 ggtcgcaggaagcagggaggatgcaatggtggctgaccgctccctctgctcacccacagg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggtcgcaggaagcagggaggatgcaatggtggctgaccgctccctctgctcacccacagg 800
Query: 601 aagcagctaacgctgcccactctccgtttgtatgaggagcactgtaagccg 651
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aagcagctaacgctgcccactctccgtttgtatgaggagcactgtaagccg 851
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space: 667281
Effective search space used: 667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
