BAC Information

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BAC

Clone NameMSMg01-451P22
Chromosome11 (Build37)
Map Location 110,777,091 - 110,777,685
singlet/doubletsinglet
Overlap genenone
Upstream geneAbca8b, Abca8a, Abca9, Abca6, Abca5, Map2k6, LOC100041523
Downstream geneKcnj16, Kcnj2, LOC667003, LOC100041539, LOC100041559, EG629966, LOC629967
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451P22.T7 (MSMg01no451_p22.b1)MSMg01-451P22.TJ (MSMg01no451_p22.g1)
ACCAG539353AG539354
length774685
length of high quality
(start - end)
634 (46 - 679)---
definitionCHROMAT_FILE: MSMg01no451_p22.b1 PHD_FILE: MSMg01no451_p22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:26 2005CHROMAT_FILE: MSMg01no451_p22.g1 PHD_FILE: MSMg01no451_p22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGTCACTTACCTTGGATCATGGGTTGGCAGCTGCTGCGTCCCTC
ATCTTTAGCAGGCGGTCAAAAGCTGAGCTGAGTGAGTCTCATGTTGTTAT
TTGAGTAAGCAGGATGTATCTTAAAGTGGTTCAAAGCCTAAGAACTGAGC
TCCGTAACATTCTTTCTCTCCACTTAAATAAAAGGATGCAGAGTGTAAGG
AGGTAGTTGTTTAAAATGTGTCTTTTATAAGCACAAGAGCTTAATTCACA
CCTGGAATCCATGCAGTTATGTGAGAACGGCGACTGCTGTCTGTGAAGGC
AGCACCTGGCGGGGAAGAGACAGGCAGATCTATGCCTCTCGATGGCCAGT
CAGCCTACTGTACCTACTGTACCTTTGAGCTCCAGGCCAGTCAGAGACCC
TCTCTCAAAACAGAAATAAAGGTAGATAGTGCCTGAGGAATGACACCAGA
GGTTGTTTTTGGCTGCCACACTCCTGTGCATACACATGCATGTACAGATA
CACACACACACACACACACACACACACACACACACACACACACACACATA
TCTGTGTGTGTATGTATATATATATATATATATATATATATATATATATA
TATATATATATATATATATACACACATATATATATATATTTTTTTTCTTT
NTTTTCTTCTTCTTTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTCACTC
GGGCGCTGGCTCGACATAGTGCCATAGAGGTCCGCGATCCTCGGAGCCTG
AAGCTGACATGAATACCCTTCCTCTGAAATAAAAAAAAAAAAAACAACCT
TTCCCCCCCCCAAAAAAAATTTTTTCCCCAGAAGGGGTGGGNNNGGNNNN
NNNCCCCCCCCANCAGGGGGGGGGGGNGCCGAAAACACCCTGGGGGCCCC
CCCCCCCCTTTTTTTTGGTGGGTGGGGGTTTTTTGTTGTGGGTGGGGNNC
GNNNNNNNNNNAATTACTTCCTCCTTCTCTCCCTCCCCCCTTCGGGTGCC
GTTGCTCCGCTCCGTTTGTCTAGGACCCCCTTTCTCTTTCTCTCCCTTTT
TGCCCCCTCCCCTATCCCTGTCCGCCTGGAATTGGGTTTGCCCGCGTCGT
GGTTTTCCCCGTCGCGCGCCGCTCTCTCTGTCACCCTTCCCTCCCCCCCT
TCTGCTTTACTTCCCGTTCACCCCGCCTTTGTTCTTCTGCGACGCCTCAG
CCTCCTTTCCCGTCTTCTCCCTCCGCCGCTTTCTTCTTCCCCCCTCCTTT
CCGTCCTCTTCTGCTCTCGAGTGCGGTCTTCCTTACTTTGCCCTCCGCGT
CCTCCCCCTACTTCTCCCCTACTCCTTCCCCTCCCTACTTTCGGAGACTC
TTCCTTTTTCCCCCTTCTCTCCTCCCTTTCCTCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_p22.b1 MSMg01no451_p22.b1 CHROMAT_FILE:
MSMg01no451_p22.b1 PHD_FILE: MSMg01no451_p22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:26 2005
         (634 letters)



>mm_chr11_110776887_110777920
          Length = 1034

 Score = 1052 bits (544), Expect = 0.0
 Identities = 589/618 (95%), Gaps = 23/618 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagtcacttaccttggatcatgggttggcagctgctgcgtccctcatctttagc 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagtcactaaccttggatcatgggttggcagctgctgcgtccctcatctttagc 264

                                                                       
Query: 65  aggcggtcaaaagctgagctgagtgagtctcatgttgttatttgagtaagcaggatgtat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggcggtcaaaagctgagctgagtgagtctcatgttgttatttgagtaagcaggatgtat 324

                                                                       
Query: 125 cttaaagtggttcaaagcctaagaactgagctccgtaacattctttctctccacttaaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttaaagtggttcaaagcctaagaactgagctccgtaacattctttctctccacttaaat 384

                                                                       
Query: 185 aaaaggatgcagagtgtaaggaggtagttgtttaaaatgtgtcttttataagcacaagag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaaaggatgcagagtgtaaggaggtagttgtttaaaatgtgtcttttataagcacaagag 444

                                                                       
Query: 245 cttaattcacacctggaatccatgcagttatgtgagaacggcgactgctgtctgtgaagg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cttaattcacacctggaatccatgcagttatgtgagaacggcgactgctgtctgtgaagg 504

                                                                       
Query: 305 cagcacctggcggggaagagacaggcagatctatgcctctcgatggccagtcagcctact 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cagcacctggcggggaagagacaggcagatctatgcctctcgatggccagtcagcctact 564

                                                                       
Query: 365 gtacctactgtacctttgagctccaggccagtcagagaccctctctcaaaacagaaataa 424
           ||||||         |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtacct---------ttgagctccaggccagtcagagaccctctctcaaaacagaaataa 615

                                                                       
Query: 425 aggtagatagtgcctgaggaatgacaccagaggttgtttttggctgccacactcctgtgc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 aggtagatagtgcctgaggaatgacaccagaggttgtttttggctgccacactcctgtgc 675

                                                                       
Query: 485 atacacatgcatgtacagatacacacacacacacacacacacacacacacacacacacac 544
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct: 676 atacacatgcatgtacagatacacacacacacacacacacacacacacacacaca----- 730

                                                                       
Query: 545 acacacacatatctgtgtgtgtatgtatatatatatatatatatatatatatatatatat 604
                    ||| ||||||||| ||| | |||||||||||||||||||||||||||||||
Sbjct: 731 ---------tatgtgtgtgtgtgtgtgtgtatatatatatatatatatatatatatatat 781

                             
Query: 605 atatatatatatatatat 622
           | ||||||||||||||||
Sbjct: 782 acatatatatatatatat 799



 Score = 99.3 bits (51), Expect = 8e-25
 Identities = 54/55 (98%)
 Strand = Plus / Minus

                                                                  
Query: 577 atatatatatatatatatatatatatatatatatatatatatatatatacacaca 631
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 799 atatatatatatatatgtatatatatatatatatatatatatatatatacacaca 745



 Score = 95.5 bits (49), Expect = 1e-23
 Identities = 55/57 (96%)
 Strand = Plus / Minus

                                                                    
Query: 575 atatatatatatatatatatatatatatatatatatatatatatatatatacacaca 631
           |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 799 atatatatatatatatgtatatatatatatatatatatatatatatatacacacaca 743



 Score = 91.6 bits (47), Expect = 2e-22
 Identities = 56/59 (94%)
 Strand = Plus / Minus

                                                                      
Query: 573 atatatatatatatatatatatatatatatatatatatatatatatatatatacacaca 631
           |||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||
Sbjct: 799 atatatatatatatatgtatatatatatatatatatatatatatatatacacacacaca 741



 Score = 89.7 bits (46), Expect = 7e-22
 Identities = 58/62 (93%)
 Strand = Plus / Minus

                                                                       
Query: 570 tatatatatatatatatatatatatatatatatatatatatatatatatatatatacaca 629
           |||| ||| |||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 808 tatacatacatatatatatatatatgtatatatatatatatatatatatatatatataca 749

             
Query: 630 ca 631
           ||
Sbjct: 748 ca 747



 Score = 85.8 bits (44), Expect = 9e-21
 Identities = 53/56 (94%)
 Strand = Plus / Minus

                                                                   
Query: 570 tatatatatatatatatatatatatatatatatatatatatatatatatatatata 625
           |||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 810 tatatacatacatatatatatatatatgtatatatatatatatatatatatatata 755



 Score = 70.3 bits (36), Expect = 4e-16
 Identities = 36/36 (100%)
 Strand = Plus / Minus

                                               
Query: 566 tatgtatatatatatatatatatatatatatatata 601
           ||||||||||||||||||||||||||||||||||||
Sbjct: 786 tatgtatatatatatatatatatatatatatatata 751



 Score = 58.7 bits (30), Expect = 1e-12
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                             
Query: 564 tgtatgtatatatatatatatatatatatatata 597
           ||||| ||||||||||||||||||||||||||||
Sbjct: 784 tgtatatatatatatatatatatatatatatata 751


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 122
Number of extensions: 46
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 13
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)