Query= MSMg01no452_o17.b1 MSMg01no452_o17.b1 CHROMAT_FILE:
MSMg01no452_o17.b1 PHD_FILE: MSMg01no452_o17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:38 2005
(633 letters)
>mm_chr11_112345669_112346699
Length = 1031
Score = 1112 bits (575), Expect = 0.0
Identities = 618/633 (97%), Gaps = 4/633 (0%)
Strand = Plus / Plus
Query: 1 tactatttttttctttctctaagaattaattcctaaaccaaccccctctgacagaatctg 60
|||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 203 tactattttt--ctttctctaagaattaattcctaaaccaaccccttccgacagaatctg 260
Query: 61 atcagtttttacactgggcgtggaaaccatggattgaccaaaactacctcctcactgccg 120
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 atcaggttttacactgggcgtggaaaccatggaatgaccaaaactacctcctcactgccg 320
Query: 121 ccttcaaaggcagaattacttatgggattctgtgtggagtcatccaccagccatccaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttcaaaggcagaattacttatgggattctgtgtggagtcatccaccagccatccaaat 380
Query: 181 accaccctttcccatagcctggtgtggaccaaaacttagcttgccctggacagtatcaga 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 accaccctttcccatagcctggtgtggaccaaaacttagcttgacctggacagtatcaga 440
Query: 241 ccaatcatttaagccatgtatggtggtttttggcaccagataatcataatttctaccaat 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 ccaatcatttaagccatgtatggtggttcttggcaccagataatcataatttctaccaat 500
Query: 301 caagttatcacatgctacatacagtgcaaagaaatgatgtatggagagagatgggaagca 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 501 caagttatcacatgctacatacagtgcaaagaaatgacgtatggagagagatgggaagca 560
Query: 361 aaaaatgtggtctaatatatagagtgtgtacagccatagcatgaagaagggagtaagaga 420
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaa-tgtggtctaatacatagagtgtgtacagccatagcatgaagaagggagtaagaga 619
Query: 421 cctttcaagggtgcacttttgtctcaacatcagaggatagagattattcaccacaaactg 480
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cctttcaagggtgcacttt-gtctcaacatcagaggatagagattattcaccacaaactg 678
Query: 481 aaaggcactacagaatagtggggtcattgcttcatttagaagtttagcagctaactgaag 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gaaggcactacagaatagtggggtcattgcttcatttagaagtttagcagctaactgaag 738
Query: 541 ccctgttgctgagagtccataagagaatgagagacattgggacactcattcctaaatggg 600
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ccctgttgctgagagtctattagagaatgagagacattgggacactcattcctaaatggg 798
Query: 601 atgtcttcaccaaatccctcccctctggtctca 633
|||||||||||||||||||||||||||||||||
Sbjct: 799 atgtcttcaccaaatccctcccctctggtctca 831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1031
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1021
Effective search space: 636083
Effective search space used: 636083
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no452_o17.g1 MSMg01no452_o17.g1 CHROMAT_FILE:
MSMg01no452_o17.g1 PHD_FILE: MSMg01no452_o17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:38 2005
(662 letters)
>mm_chr11_112506108_112507169
Length = 1062
Score = 1191 bits (616), Expect = 0.0
Identities = 622/624 (99%)
Strand = Plus / Minus
Query: 1 ctttgttttgtttgtttatctgagacagagaggctcactactcaacccaggctgaccata 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 624 ctttgttttgtttgtttatctgagacagaggggctcactactcaacccaggctgatcata 565
Query: 61 gacaatgatcctcctgcctcattccccccagagtgttaggattgtaagcatttgccattc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gacaatgatcctcctgcctcattccccccagagtgttaggattgtaagcatttgccattc 505
Query: 121 tgccttgaacatatttagtcttttctggtttccagaggagtctgtccttccttaagggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgccttgaacatatttagtcttttctggtttccagaggagtctgtccttccttaagggag 445
Query: 181 gttacgtcctgggagacaacatgccacacagattctccttgaggccgatgagctctggct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gttacgtcctgggagacaacatgccacacagattctccttgaggccgatgagctctggct 385
Query: 241 tcaggatcagttgtgataccctggagtatgatttacttcgggtgttatttttcctgactg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcaggatcagttgtgataccctggagtatgatttacttcgggtgttatttttcctgactg 325
Query: 301 ttcttcaagggtctggtggtaaatattttgggccctggatgagtttccctgtttaactag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttcttcaagggtctggtggtaaatattttgggccctggatgagtttccctgtttaactag 265
Query: 361 tcagttctttctctgtaacatgacaccagccatagagatatgtaaataaataggctcacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcagttctttctctgtaacatgacaccagccatagagatatgtaaataaataggctcacc 205
Query: 421 tcagtaccagcaaaaattgatttacaaaaccagatgatcaggtaatgaatgggccatagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tcagtaccagcaaaaattgatttacaaaaccagatgatcaggtaatgaatgggccatagt 145
Query: 481 aggctaagcccatagctagtcattgtatcttaatcctaagtaatggcatttttggtgttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 aggctaagcccatagctagtcattgtatcttaatcctaagtaatggcatttttggtgttt 85
Query: 541 agttgcaggctaaggtaacagtatctttctcttttagatgggacaaaggcccaaatgtct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 agttgcaggctaaggtaacagtatctttctcttttagatgggacaaaggcccaaatgtct 25
Query: 601 ccctgtctcatgcactctcaagtc 624
||||||||||||||||||||||||
Sbjct: 24 ccctgtctcatgcactctcaagtc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space: 685904
Effective search space used: 685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
