BAC Information

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BAC

Clone NameMSMg01-453H16
Chromosome11 (Build37)
Map Location 120,404,976 - 120,405,500
singlet/doubletsinglet
Overlap geneBC003940
Upstream geneNptx1, 4932417H02Rik, Chmp6, Baiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr
Downstream geneDysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453H16.T7 (MSMg01no453_h16.b1)MSMg01-453H16.TJ (MSMg01no453_h16.g1)
ACCAG540481AG540482
length974791
length of high quality
(start - end)		---529 (75 - 603)
definitionCHROMAT_FILE: MSMg01no453_h16.b1 PHD_FILE: MSMg01no453_h16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:22 2005CHROMAT_FILE: MSMg01no453_h16.g1 PHD_FILE: MSMg01no453_h16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCTGACCCTCCCCTCTGCGTGCCTTCCTCTCCCTCTCACTCATAAAGGA
GACTCTCTCGATCCCACAAAAGCCTACCCCACCCTGCGCTTGTCGGACGG
GTTGTTCTCCCCGCTTATATTAAGATACCACAAATAAAAACACATATATA
TGATTTTCTCTTTCTACCCGCCGCCTCGGCCACCACCTAGATATCCCCAT
TATCTAAGACCATGAGAAAGCTGATGAGAAGTGGAACGATCCACCGGTGA
ATAGAGTTATTAAGATAGAGGGAAGAAATCACTGTCCGGAACGCGGAATT
ACCCACTACCTTCTCCCCTCACCTGCAATTAACCTCCTCTTTTTACCTCC
CCCTATTGTCACACAACCCCCCTTTTCTTTGACTGCTCACACCTAACATA
ACGTCCGCGACATCCTATTTATATGTAGATCTAAACCTACACTCATACAT
TTTAGTGGTGACAAGATTATCAATTACCCATTCCTATCCTCCTAATAAAC
AGCGTCTGGGGTTTCTACGCTTCCCTCGCCTTATTCCCCGGCCTCCTGTA
TTATAATGCTGGGCACGTAATAAGCGTTGTGTGTGTTATTCGATATTGTC
TCCCAATTAAGGTTGTGGTGCCTCCACTCTCACCACCCACCCAATTTTTT
TGCCAAACCACCTAACTATACTCAGCGCGGTCTCACATCTTGGGGGGCGC
GTGTCTAGTATGACCGTCCCGACTCGGCCACGCTCGCAGCTGCTCTTATA
CAATTCATTCCTCCGTAAAAGAATCGAGCCACCGAAGAGCGACGGGGGGT
GCTAATTCCGCAATAGGATATCTTGGGTCGACAAGACTGACGATCGACCA
CTTTATACCGAGAATGTCATCACTCAACCATTGGTAATACTCGCACCTAT
GGATCACTATACTAACATATCTAGCCCACAGCATACGAGACTCCCTCCAC
ACTTTTAGAAATAATCACGTTTAN

ACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAACGTCTCAGACAAGACTGACAAACA
GAGAAACCCTGTCTCCAAAACCAAAACCAAACCAAAACAAGCTCTCATCT
AATAGAGGGAGACAGGTAGGAGCAGGGGCTACATGACCTGGCACGAGACC
AGAATGCTCTGTTGGCTTGAGTACTGCTGAGCGCTGAACCTGTTGTCTGC
TGCAGCCTGGCAGGGTGTTGAGCGAGACCTGCGCAGCCAGCTGTCCAGTG
GTGAGCGGTGCCTAGTGGAGGAGTATGTGGAGAAAGTCCCCAATCCCAGC
CTGAAGAGTGAGTAGGGCCGACCTGGAGGAGCTGACCAGGCTTCTGCTGA
ATGCCTGCACTGTGTCCTTTCCAAGGCACCTGGGTTTGGGAGCCTCTAGT
AGTGGGAAGCGGATGGGGGGGGGGGGGGTCCTCTTCCCAGCACCAACCAG
ACTGTCCACCAACAGCCTTCAAGCCCATCGACCTGAGTGACCTGAAGCGC
CGGAACACGCAGGATGCCAAGAAGTCCTAGAGCTCCTGGCGCCCTCCCCT
GGGCTCCAGAAACTCAAGGTGCACTTGATGGGGGGTTCCTGTGTTCCTGG
GGCGCTGCTCCTGGGGGGAAAGAGTGTGTTCTAATAGGGCGTGATCCCAC
AGCCCGACGATTGATGACCAGGGCCTTTCTTTCCCCCCTAGGTCTCAGTT
GCCCCTGTCACTGTGGGAAAAGGGGCTGGTTGTTTCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_h16.g1 MSMg01no453_h16.g1 CHROMAT_FILE:
MSMg01no453_h16.g1 PHD_FILE: MSMg01no453_h16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:22 2005
         (529 letters)



>mm_chr11_120404776_120405701
          Length = 926

 Score =  990 bits (512), Expect = 0.0
 Identities = 523/528 (99%), Gaps = 3/528 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacgtctcagacaagactgacaaacagagaaaccctgtctccaaaaccaaaaccaaacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 aacgtctcagacaagactgacaaacagagaaaccctgtctccaaaaccaaaaccaaacca 666

                                                                       
Query: 61  aaacaagctctcatctaatagagggagacaggtaggagcaggggctacatgacctggcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 665 aaacaagctctcatctaatagagggagacaggtaggagcaggggctacatgacctagcac 606

                                                                       
Query: 121 gagaccagaatgctctgttggcttgagtactgctgagcgctgaacctgttgtctgctgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gagaccagaatgctctgttggcttgagtactgctgagcgctgaacctgttgtctgctgca 546

                                                                       
Query: 181 gcctggcagggtgttgagcgagacctgcgcagccagctgtccagtggtgagcggtgccta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gcctggcagggtgttgagcgagacctgcgcagccagctgtccagtggtgagcggtgccta 486

                                                                       
Query: 241 gtggaggagtatgtggagaaagtccccaatcccagcctgaagagtgagtagggccgacct 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 485 gtggaggagtatgtggagaaagtccccaaccccagcctgaagagtgagtagggccgacct 426

                                                                       
Query: 301 ggaggagctgaccaggcttctgctgaatgcctgcactgtgtcctttccaaggcacctggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ggaggagctgaccaggcttctgctgaatgcctgcactgtgtcctttccaaggcacctggg 366

                                                                       
Query: 361 tttgggagcctctagtagtgggaagcggatggggggggggggggtcctcttcccagcacc 420
           ||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||
Sbjct: 365 tttgggagcctctagtagtgggaagcggat---gggggggggggtcctcttcccagcacc 309

                                                                       
Query: 421 aaccagactgtccaccaacagccttcaagcccatcgacctgagtgacctgaagcgccgga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aaccagactgtccaccaacagccttcaagcccatcgacctgagtgacctgaagcgccgga 249

                                                           
Query: 481 acacgcaggatgccaagaagtcctagagctcctggcgccctcccctgg 528
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 acacgcaggatgccaagaagtcctagagctcctggcgccctcccctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 926
Length adjustment: 10
Effective length of query: 519
Effective length of database: 916
Effective search space:   475404
Effective search space used:   475404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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