Query= MSMg01no453_k19.b1 MSMg01no453_k19.b1 CHROMAT_FILE:
MSMg01no453_k19.b1 PHD_FILE: MSMg01no453_k19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:37 2005
(692 letters)
>mm_chr11_71342418_71343509
Length = 1092
Score = 1019 bits (527), Expect = 0.0
Identities = 583/609 (95%), Gaps = 15/609 (2%)
Strand = Plus / Minus
Query: 90 tgtgatgtgatgtgtgtgtgtgt------gcatatgtgtgttgttatgtcatttacattg 143
|||| |||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 974 tgtg-tgtg-tgtgtgtgtgtgtgcgcgcgcatatgtgtgttgttatgtcatttacattg 917
Query: 144 ctcagtgaattgttatacttaatcacatattacaacccatccatagaacactaggttttc 203
|||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 916 ctcagtgaattgttatacttaatc-------acaacccatccatagaacactaggttttc 864
Query: 204 ttttcagtacgtgcataccaccccagaacactgatgtgctgtggtttagccaactgcagt 263
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 ttttcagtacgtgcataccaccccagaacactgatgtgctgtggtttagccaactgcaga 804
Query: 264 cttatggttatttcaatttgccactccacacactgggggagacaaagttcttgctgtgcc 323
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 cttatggttatttcaatgtgccactccacacactgggggagacaaagttcttgctgtgcc 744
Query: 324 acacataggagccaacattcttatcaaaaagggactcctgggtcaaagatgtatactttt 383
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 acacataggagccaacattcttatcaaaaagggactcctgggtcaaagatgtatactttc 684
Query: 384 cttttaacgtgtgaagaaaaaaaatcagtcaatttagtctggaaattttgtagagtttca 443
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 cttttaacatgtgaagaaaaaaaatcagtcaatttagtctggaaattttgtagagtttca 624
Query: 444 ctgtgaaggtattggaaccaaggagaaaagagaaactaaggcaacttggaggaatgagac 503
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 623 ttttgaaggtattggaaccaaggagaaaagagaaactaaggcaacttggaggagtgagac 564
Query: 504 aatcactgagaaggtgacagctcagaggggcccaagcaggaataaatgtttgcctaatga 563
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 agtcactgagaaggtgacggctcagaggggcccaagcaggaataaatgtttgcctaatga 504
Query: 564 tgagtaagtttgggaaggatgacccagatggtaaagaagacactgactgtaagaaaaggt 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgagtaagtttgggaaggatgacccagatggtaaagaagacactgactgtaagaaaaggt 444
Query: 624 gacaacatctgcaaaggcctgtgccttagagaatatttctgctgattgggaagatagggg 683
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 443 gacaacatctgcaaaggcctgtgccttagagaatatctctgctgatagggaagatagggg 384
Query: 684 ttgaccaga 692
|||||||||
Sbjct: 383 ttgaccaga 375
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space: 737924
Effective search space used: 737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no453_k19.g1 MSMg01no453_k19.g1 CHROMAT_FILE:
MSMg01no453_k19.g1 PHD_FILE: MSMg01no453_k19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:37 2005
(697 letters)
>mm_chr11_71159269_71160365
Length = 1097
Score = 1317 bits (681), Expect = 0.0
Identities = 693/697 (99%)
Strand = Plus / Plus
Query: 1 cctgagaggagtctttcagagaaggccaaatctctaggtgtctgggagttagtatggaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgagaggagtctttcagagaaggccaaatctctaggtgtctgggagttagtatggaga 260
Query: 61 gctaataagcccccagccccggaggttctgctaagccttcttagaaaaggacaaatcctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctaataagcccccagccccggaggttctgctaagccttcttagaaaaggacaaatcctt 320
Query: 121 ggtatcaaatggtcattaagccccgtatcctccaggctctctttttcatgacaaatttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtatcaaatggtcattaagccccgtatcctccaggctctctttttcatgacaaatttta 380
Query: 181 gtttgggccaccaggtggtgataattcaatagaaataagttctggagtcatgagaaaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttgggccaccaggtggtgataattcaatagaaataagttctggagtcatgagaaaatg 440
Query: 241 cattactagcaggatgaaaggctctggggcaaagagccagagagctcacagggagagcag 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cattactagcaggctgaaaggctctggggcaaagagccagagagctcacagggagagcag 500
Query: 301 aggccgagcttgtggactggttgaggaatgactgggaggcttgagtctctggttctgtct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggccgagcttgtggactggttgaggaatgactgggaggcttgagtctctggttctgtct 560
Query: 361 atgcctaggtctagagaaaaattctgaattacagagactaaggtaggagcagacacatgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgcctaggtctagagaaaaattctgaattacagagactaaggtaggagcagacacatgc 620
Query: 421 acagaggcctcactaacctctctgggtttagtgggcaccactgcttacatcgttagccac 480
||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 621 acagaggcctcactaacttctctgggcttagtgggcaccactgcttacatcgttaaccac 680
Query: 481 attggacagagccttgctactcagtgccaaggaagagcattcctcatgacctctgcttca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attggacagagccttgctactcagtgccaaggaagagcattcctcatgacctctgcttca 740
Query: 541 gtccctgcctgcaggttcctgccttgatttcctgttctgacttctcttagtgatgaactt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtccctgcctgcaggttcctgccttgatttcctgttctgacttctcttagtgatgaactt 800
Query: 601 gatctatagaatgaaacaaaccttttcctgccttggttgtttttggtcatggtgtttatc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gatctatagaatgaaacaaaccttttcctgccttggttgtttttggtcatggtgtttatc 860
Query: 661 acagcagtagaaaccataatgaagacattggttcttt 697
|||||||||||||||||||||||||||||||||||||
Sbjct: 861 acagcagtagaaaccataatgaagacattggttcttt 897
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1097
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1087
Effective search space: 746769
Effective search space used: 746769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
