Query= MSMg01no453_l08.b1 MSMg01no453_l08.b1 CHROMAT_FILE:
MSMg01no453_l08.b1 PHD_FILE: MSMg01no453_l08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:40 2005
(657 letters)
>mm_chr11_63663607_63664664
Length = 1058
Score = 1236 bits (639), Expect = 0.0
Identities = 648/653 (99%), Gaps = 5/653 (0%)
Strand = Plus / Plus
Query: 8 gaattcacatctttatcaa---ttatgcttacccccactcctttgtgattcaaaatacaa 64
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcacatcttta--aaagattatgcttacccccactcctttgtgattcaaaatacaa 265
Query: 65 taaaagcactcataaacttctcttattgctatgacgactgaggcctctgtttgcactgcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 taaaagcactcataaacttctcttattgctatgacgactgaggcctctgtttgcactgcc 325
Query: 125 tggcttggtacaggattaaatgacacactttggaagccccagtcatgggccacccatgtg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tggcttggtacaggattaaatgacacactttggaagccccagtcatgggccacccatgtg 385
Query: 185 ccaaaatgagagacaggtgtcaggaccacacttcacattcccccagatgagcccgcactg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ccaaaatgagagacaggtgtcaggaccacacttcacattcccccagatgagcccgcactg 445
Query: 245 aatgaaacacggaatcagaaacaattggtccttcatcttcaatcaccttgcgaggcctaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aatgaaacacggaatcagaaacaattggtccttcatcttcaatcaccttgcgaggcctaa 505
Query: 305 ttgggtgggcaatttcaatggaactctctcatcacttcaagcagccagtcacctaactct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ttgggtgggcaatttcaatggaactctctcatcacttcaagcagccagtcacctaactct 565
Query: 365 aaagagctatctaactgcttcgccagtcttcgtgctcacaggtgtgatgtcccacatgtg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 aaagagctatctaactgcttcgccagtcttcgtgctcacaggtgtgatgtcccacatgtg 625
Query: 425 acgtcatgtgcacactgctgtgatgatgaggttggaccagttctagcacgaggttcatcg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 acgtcatgtgcacactgctgtgatgatgaggttggaccagttctagcacgaggttcatcg 685
Query: 485 atgctgtgtacatccctgtaattattcagctccctacctcctcacgcactaaactaaaac 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 atgctgtgtacatccctgtaattattcagctccctacctcctcacgcactaaactaaaac 745
Query: 545 cagctaggaatctgtaccatctgtgaccagaaggctcgtcctgaaccttagcacaattca 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 cagctaggaatctgtaccatctgtgaccagaaggctcgtcctgaaccttagcacaattca 805
Query: 605 tatttcagataataggcatgacagtaaattactgtccaagcctgctggtgtgg 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 tatttcagataataggcatgacagtaaattactgtccaagcctgctggtgtgg 858
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1058
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1048
Effective search space: 678056
Effective search space used: 678056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no453_l08.g1 MSMg01no453_l08.g1 CHROMAT_FILE:
MSMg01no453_l08.g1 PHD_FILE: MSMg01no453_l08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:40 2005
(620 letters)
>mm_chr11_63833267_63834281
Length = 1015
Score = 1129 bits (584), Expect = 0.0
Identities = 609/620 (98%), Gaps = 5/620 (0%)
Strand = Plus / Minus
Query: 1 ttaattatagatatagacgtaaaaatctgaatggattaaagaattatcttatctgcattt 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 815 ttaattatagatatagacgtaaaaatctgaatggattaaagaa-----ttatctgcattt 761
Query: 61 taatgatgcaattttgagcactttgattttcagctgtgatgctgtttatttttcttatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 taatgatgcaattttgagcactttgattttcagctgtgatgctgtttatttttcttatat 701
Query: 121 ttatgaaatttaaacatttgctttgaatgttgtacatgaggtctgtttgataaaagactc 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 700 ttatgaaatttaaacatttgctttgaatgttgtagatgaggtctgtttgataaaagactc 641
Query: 181 cccctgtagtcattacttttgaacactatcagatatccattttatttcattattctgtaa 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 640 cccctgtagtcattacttttgaacactatcagatatccattttatttcattattctgtga 581
Query: 241 ctgtacttcctttcttattattcttacatatttctcgaaaggagctctctcctcttgcat 300
||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 580 ctgtacttcctgtcttattattcttacatatttctggaaaggaactctctcctcttgcat 521
Query: 301 agtcatttggccataatatccattagaatttagtgagttagagtataaattatccagaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 agtcatttggccataatatccattagaatttagtgagttagagtataaattatccagaat 461
Query: 361 tactttagtaaggaatgtgcacatagagtaaggatattactgtgttatttgcatgtatga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tactttagtaaggaatgtgcacatagagtaaggatattactgtgttatttgcatgtatga 401
Query: 421 atctttgtaaaaatattttcactctaaatatttagataattagataaagaatattgaagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 atctttgtaaaaatattttcactctaaatatttagataattagataaagaatattgaagg 341
Query: 481 acggaaacagggtgtactgagagggagaagttagacatatggatggacttatgatcatac 540
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 acggaaacagggtgtgctgagagggagaagttagacatatggatggacttatgatcatac 281
Query: 541 aggctggactgagctatggcaggaccatagaatacatcagtactcaattctaagagaaca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 aggctggactgagctatggcaggaccatagaatacatcagtactcaattctaagagaaca 221
Query: 601 cttctcaggatatatttcta 620
||||||||||||||||||||
Sbjct: 220 cttctcaggatatatttcta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1015
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1005
Effective search space: 613050
Effective search space used: 613050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
