BAC Information

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BAC

Clone NameMSMg01-455D17
Chromosome11 (Build37)
Map Location 49,219,822 - 49,220,473
singlet/doubletsinglet
Overlap geneLOC667286
Upstream geneLOC192895, Hn1l-ps2, LOC667163, LOC432554, Gnb2l1, Trim41, LOC100039945, Trim7, Irgm, EG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214, Tgtp, LOC667219, 9930111J21Rik, Olfr56, LOC100039796, Ifi47, Olfr1396, Olfr1395, Olfr1394, Btnl9, Zfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390
Downstream geneOlfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9, Rasgef1c, Rnf130, LOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik, Hnrph1, Rufy1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455D17.T7 (MSMg01no455_d17.b1)MSMg01-455D17.TJ (MSMg01no455_d17.g1)
ACCAG541820AG541821
length7251,393
length of high quality
(start - end)		652 (72 - 723)---
definitionCHROMAT_FILE: MSMg01no455_d17.b1 PHD_FILE: MSMg01no455_d17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:41 2005CHROMAT_FILE: MSMg01no455_d17.g1 PHD_FILE: MSMg01no455_d17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNGNGG
AATTNAATTCTTTCCCATTCAGTTCAAAGCAGTTTAGCTCAGTTCAATTC
AGAGCAGTTCAGTTCAGGTCAGTTCAGTCCAGCCCAGTTCAATCCAGTCC
AGTTTAATCCAGTCCAGTCCAGTTCAGGCTTAGGAAATTCTCAATCAAAT
AAGGACACCAAATTTTGCTTCTAAATATGATACATTGTTCGAGATTTCTT
AGGCTTTCCACCTGTCCTATTGCTAAGAATTCAGAGTTGCTAATGTTGGA
GTTATGTTCCAAAAGAGGAAATAATAGTAGCAACCATGTCCCTCTCAAAC
CTCCTGTGCAGATCCTAGCAGTCTAGTGTTTGGGTTTACTGTTTTCGGAT
CATTTGAACTCTTGGCCATTCCAGGGATTACTTGACCACTGTCTTGTATT
TTTTTGTCCATCGTTTGGCCACAAAGTAAATGTTCTTGTTCCTCTACACA
TTCGCTGAAGAGCGCTGCTTTGCCACAGTTGCCAAAGGAATGGTGCACTC
TAAAATGAGCCAAAGAAAACATTTCTTTTGAATTTATTATCTCAAAAATT
TGCATTAAGTAAAGTAGAGAAGTAAACAGAGCATCATGATAAAGACCAAT
GGTGACAACTTATGGAGAAGTGTAATAGTAATGTTATACAAACAGTACAC
TCTACACAGCTTTAGCTATTAATTN

CTACATACACNTAGTGGGGCGGTGGTCGAGGAGACAGGCGCCGCCGCCTT
AGACCGGTCGGGATNATAGCGGCGAAAATGCGGGAAGGTGAGTGGTACCC
ATATTCTACACCTCGTTTNCACACACCCCTAGTGTCGTGTTCTTATTTCT
CTTTATTTACCTGTGCACCACCACCGCCNTCCCACCACTGGCAGCTTGTA
ACGCACATAAGTAAATAGGAGCCAATAGATAGCACCCGGGTAGTGGTTGA
ATATTATAAATTCTCTGTAGGACTCGCTATTATATCTGATTCAGAATCAA
TATACGACACAACGATTATATAATCTTATACCAGCTACTTCACATACTAG
ACAATCACAACGATTATGTCATAACATACCCCAGNCCGCGGGCGTGTGTC
GCGTATGGCGAGGATGAAGCGGAGTGACGGTACGAAGCACGTGTAGATGT
TATTCGAGAGCATGCCACGCAGTTACAGACAACGTGTGACTAGCCAGCGA
GGCGGCGAATGCAGATGTGGCGAGGTACGCGCGCGGTCGACGCATATAAA
ACACTCATAATCTGACATGTCACCATATATATTAATATCAGACGACACAT
AAGATCAACATACACACATTCTATACTGTCGTGCGTGTCAGGCGTGCGGT
CTTGAGACGGCGTGTTATAGTGTCGCAGAGGTCCNCNCAAGACGCGTGAC
TGACATAAGCTCAGCACACGCACCATCGGAATGTATATAGTCGTATGAAT
ATAGATGTTGATGCTGACTATGTCTGCGGAGTCGCGCGNACATAATTATA
ATCACTGAGAGCACGCTCAGCTATGTACGCATATNATACTATACTGCACA
ATGAGGATATAGAGGAGCCACACATATGATTCAACAGCACGCTATGTGGT
ATCCACGCGACATGTAATATATATTACGGCGCGACCTCCGCCTCCTCAGC
GACCAGTGACAATATGGAAAACGCTGACGNGGTGAGTGTACACGTGATGA
GTGAATTGAGTATAGAATCACACGACATAACTGCCGATAACTATGCATTC
TGTCGAGTGTACGCGCGTCCATAATATCGCATTAGTCTATGCACATCGTN
TCGTCCTTACGATCANGTGCCANCCATGCGTGGCCAGCGCAGCGCACTCT
GACTTGGTGTGCGTCATTGCCGCACACACCGCGCACCCAACGCAGTCTGA
CACACATCATGCTCTGTGTAGGCGCGCTCGTGCGCCAGCNTGATCCTCTA
CTCGACATCANTGNTCACATATCCACACCACGCCTTGACCTACTCGAACG
TCTCTCTGTGTGTCGCGACCACACATGCAGCGAGTGAGTATGACNCATTG
AGGTCTCTGTGTGACGTGCTGGATCTCGCGCTCTCANGACGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_d17.b1 MSMg01no455_d17.b1 CHROMAT_FILE:
MSMg01no455_d17.b1 PHD_FILE: MSMg01no455_d17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:41 2005
         (652 letters)



>mm_chr11_49219622_49220673
          Length = 1052

 Score = 1261 bits (652), Expect = 0.0
 Identities = 652/652 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttcaaagcagtttagctcagttcaattcagagcagttcagttcaggtcagttcagtcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttcaaagcagtttagctcagttcaattcagagcagttcagttcaggtcagttcagtcca 260

                                                                       
Query: 61  gcccagttcaatccagtccagtttaatccagtccagtccagttcaggcttaggaaattct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcccagttcaatccagtccagtttaatccagtccagtccagttcaggcttaggaaattct 320

                                                                       
Query: 121 caatcaaataaggacaccaaattttgcttctaaatatgatacattgttcgagatttctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caatcaaataaggacaccaaattttgcttctaaatatgatacattgttcgagatttctta 380

                                                                       
Query: 181 ggctttccacctgtcctattgctaagaattcagagttgctaatgttggagttatgttcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggctttccacctgtcctattgctaagaattcagagttgctaatgttggagttatgttcca 440

                                                                       
Query: 241 aaagaggaaataatagtagcaaccatgtccctctcaaacctcctgtgcagatcctagcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagaggaaataatagtagcaaccatgtccctctcaaacctcctgtgcagatcctagcag 500

                                                                       
Query: 301 tctagtgtttgggtttactgttttcggatcatttgaactcttggccattccagggattac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctagtgtttgggtttactgttttcggatcatttgaactcttggccattccagggattac 560

                                                                       
Query: 361 ttgaccactgtcttgtatttttttgtccatcgtttggccacaaagtaaatgttcttgttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgaccactgtcttgtatttttttgtccatcgtttggccacaaagtaaatgttcttgttc 620

                                                                       
Query: 421 ctctacacattcgctgaagagcgctgctttgccacagttgccaaaggaatggtgcactct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctctacacattcgctgaagagcgctgctttgccacagttgccaaaggaatggtgcactct 680

                                                                       
Query: 481 aaaatgagccaaagaaaacatttcttttgaatttattatctcaaaaatttgcattaagta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaatgagccaaagaaaacatttcttttgaatttattatctcaaaaatttgcattaagta 740

                                                                       
Query: 541 aagtagagaagtaaacagagcatcatgataaagaccaatggtgacaacttatggagaagt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aagtagagaagtaaacagagcatcatgataaagaccaatggtgacaacttatggagaagt 800

                                                               
Query: 601 gtaatagtaatgttatacaaacagtacactctacacagctttagctattaat 652
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gtaatagtaatgttatacaaacagtacactctacacagctttagctattaat 852


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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