Query= MSMg01no455_d23.b1 MSMg01no455_d23.b1 CHROMAT_FILE:
MSMg01no455_d23.b1 PHD_FILE: MSMg01no455_d23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:42 2005
(611 letters)
>mm_chr11_39355529_39356539
Length = 1011
Score = 1129 bits (584), Expect = 0.0
Identities = 609/628 (96%), Gaps = 18/628 (2%)
Strand = Plus / Plus
Query: 2 agaacttcgggatcaatcctgcaatctcaatttctgcatcttttatgttatcacaaccat 61
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 184 agaacttcgggatcaatcctgcaatctcaatttctgcatcttttacgttatcacaaccat 243
Query: 62 aatacatattatctatctagtgtttaagtaaaggttaaaatgataccatgtgttaagcta 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 aatacatattatctatctagtgtttaagtaaaggttaaaatgataccatgtgttaagcta 303
Query: 122 tttacatatgcctattgtcataaatttaggaggagagttgtaagataaagaattgtttca 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tttacatatgcctattgtcataaatttaggaggagagttgtaagataaagaattgtttca 363
Query: 182 caaaatatttctcatttctgaatataaatttatgacagcaaagaaaagaactcccttact 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 caaaatatttctcatttctgaatataaatttatgacagcaaagaaaagaactcccttact 423
Query: 242 ccccttactcttctctcctctcctcctcatcctctctcctcattctgtcctctcctcatc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ccccttactcttctctcctctcctcctcatcctctctcctcattctgtcctctcctcatc 483
Query: 302 ttctcactcttttactctctcaccctcttactct------------ttagcctgtcttct 349
|||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 484 ttctcactcttttactctctcaccctcttactctctttcttactctttagcctgtcttct 543
Query: 350 ctctctctctctctctctctct------ttcccctgcctttctacaataaagctctaaaa 403
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 544 ctctctctctctctctctctctctctctttcccctgcctttctacaataaagctctaaaa 603
Query: 404 acataaaaaagaaaaaagaaattgatatttttataaacacacatacatatctacatagag 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 acataaaaaagaaaaaagaaattgatatttttataaacacacatacatatctacatagag 663
Query: 464 agatagatatagagagagccaaatgtagaaagtaaatattgtccttttaacattttgtag 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 agatagatatagagagagccaaatgtagaaagtaaatattgtccttttaacattttgtag 723
Query: 524 cggtacataataaaaataatatcatattgcaagcacaatatacaaatttcttttgcagtg 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 cggtacataataaaaataatatcatattgcaagcacaatatacaaatttcttttgcagtg 783
Query: 584 tatacccagtagtcaaactctattagat 611
||||||||||||||||||||||||||||
Sbjct: 784 tatacccagtagtcaaactctattagat 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no455_d23.g1 MSMg01no455_d23.g1 CHROMAT_FILE:
MSMg01no455_d23.g1 PHD_FILE: MSMg01no455_d23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:42 2005
(512 letters)
>mm_chr11_39543638_39544550
Length = 913
Score = 928 bits (480), Expect = 0.0
Identities = 505/514 (98%), Gaps = 3/514 (0%)
Strand = Plus / Minus
Query: 1 agtattttttttattatatttgatgcatttgatgtcacagagtagccaaaaaattcttaa 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 agta-tttttttattatatttgatgcatttgatgtcacagagtagccaaaaaattcttaa 655
Query: 61 ggaataagtatttctcttgatatacaaataagttaagatgattgctaatgaagaaatgac 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 654 ggaataagtatttctcttgatatagaaataagttaagatgattgctaatgaagaaatgac 595
Query: 121 atcattgcaatgtcgttgtcttataatctaaaatggaattatttgtcctggccatgacaa 180
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 594 atcattgcgatgtcgttgtcttataatctaaaatggaatcatttgtcctggccatgacaa 535
Query: 181 ccaacagaagctaaaattagaaagaaaaatacataacttgcattacacattttcttaatg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gcaacagaagctaaaattagaaagaaaaatacataacttgcattacacattttcttaatg 475
Query: 241 gagatatacataaatgagtttatgtagaaggaaaaaaaatgtcctttattctgcataatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gagatatacataaatgagtttatgtagaaggaaaaaaaatgtcctttattctgcataatc 415
Query: 301 aaaccaaaaccaggaactctcatctgtcctctgtactgaatgtcaccacagatgcaggaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 aaaccaaaaccaggaactctcatctgtcctctgtactgaatgtcaccacagatgcaggaa 355
Query: 361 aat--agtcagtaatctaaaaagtagaatgtatcaagagatctagaatggtctgggtgtg 418
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 354 aatagagtcagtaatctaaaaagtagaatgtatcaagagatctagaatggtctgggcgtg 295
Query: 419 gagatatgtaaatttattcccagaatccaggaggcagagaagtggtccaacctggtctac 478
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gagatgtgtaaatttattcccagaatccaggaggcagagaagtggtccaacctggtctac 235
Query: 479 acagcaagtttcaatcaggctttcaagaagctta 512
||||||||||||||||||||||||||||||||||
Sbjct: 234 acagcaagtttcaatcaggctttcaagaagctta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 913
Length adjustment: 10
Effective length of query: 502
Effective length of database: 903
Effective search space: 453306
Effective search space used: 453306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
