BAC Information

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BAC

Clone NameMSMg01-455F10
Chromosome11 (Build37)
Map Location 121,519,365 - 121,519,773
singlet/doubletsinglet
Overlap geneB3gntl1
Upstream gene5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750
Downstream geneMetrnl, Ptchd3, LOC667879, LOC674842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455F10.T7 (MSMg01no455_f10.b1)MSMg01-455F10.TJ (MSMg01no455_f10.g1)
ACCAG541902AG541903
length725790
length of high quality
(start - end)
409 (67 - 475)90 (72 - 161)
definitionCHROMAT_FILE: MSMg01no455_f10.b1 PHD_FILE: MSMg01no455_f10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:49 2005CHROMAT_FILE: MSMg01no455_f10.g1 PHD_FILE: MSMg01no455_f10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCAAAATTGGCGGCCNGTATATGACTCTTTTCACAAAGAGGACCCGC
GGAAATCCTCTTCTCTTCCCCTGTGAGATATCTAGTCCTGCCTCAGCTCA
CTGGCCATAGGCTTTTTTATTGATAGGTGATGCTTCCATACAGCATATAA
TAGATTCTCTCTATACATTATCCTTCTAGACTTCTCACCTCATGCCAAGC
AAATATACAAAAGTAAATAAAAGTAAAATATCTAATCAGGATTAAACCAT
CTACATAGAAAGTCCAAAATAATGTGTGAAAATTTAACTAAAGGTAGAGG
AGGAAATAAACAATAAAGCTGGTTAATCCCACCCCAGGATCCTGAACTGG
GTAAACTGGGTAACTAGATGGCAGCAGAGAACCTGCTGTCAGAGAGCCTG
ACAACACTTCCTGGGAACTAACTTCCCGTCTATATAAAACAGGAGGGGCC
ATTCCTTCTCATTTCCATGAGTGTCTGAAAAAGGGAAATGAACTGCATGG
AAGGAGAAGGAAGAAGGAAATGGGGGAAAGGAGGAGAGAGAGGTGAGAAG
GAAGGGAGCCCCTCTCTTTTTCTGTTTTCCATTCATTTCTTTTCCTTTTC
CTGTTTTGTAGCATAATTCTTCTCTTCTACCCTTCTTTTATTTTACTATC
TCCTCATCTTTTTTCCTCTTTCTCCACTCATTTACTTTTTTTCATTTGAT
GCATATCATTCTATATCTCTGCCGA
CCATGACANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTCCACAGCGCAATTCTAATTTGAGAGAATCCACAGATTTT
TAAATGAAAGTATTTTAACAAAAAATTTAAAAATAAAAGAAAAAAGAAAG
AGAAAATGATAACATAAAAAAGATACCAAAAAACCCAAAAAAATAAAAAA
ATATCAGTGTTTGTAGCTNAAGCGTATANNNAGGAAAAGCGNTANCAAAC
TTNCCACAGNNNNNNNNATNNGGGCGAATACTCNNNNNTCGGNCCTNGAG
GAGGGGGCGGCGGGGGGTCTGTGGGGGAGGAAGACGGATNAACCCNNAAA
NNAAANAAAAAGGCCAAATTTGCTTTTCCCCCCCCCCTGAAAACACCCCC
ACCCCCAAACACTTTTAAAAAAAAAGGGGTTAATTCCCCTTAACCCTTTA
CGGGCCCCCCGGGGGAAACCCCAAAAAAAACTTTTTGGGAAAACCCCTAA
AAACCTTTCCCAAAAAAAACCCCGGAAAACCTTGTTNTATAACCTTTTTC
CCCCCCGGTCCCTGGAATTTTTTTTCTCCCCCCCCCCCCCACAAAAAGAA
AAATTATTTTATTAATCCACCCCCCCCANCCCNCCCCCCCCCCCCCCCTC
TTTTTTTTTTTTTTAAAAAACCCCCCTCCCCTTTTTTTCACNCCNNNAAA
AAAAAAAATAAAACCAATCTCACCCCCCCCCCCCCCCCCCCTANATANNT
CCTTTTATTTTTTCCCCAATATAACGGAAAGGGAGGCGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_f10.b1 MSMg01no455_f10.b1 CHROMAT_FILE:
MSMg01no455_f10.b1 PHD_FILE: MSMg01no455_f10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:49 2005
         (409 letters)



>mm_chr11_121519165_121519973
          Length = 809

 Score =  760 bits (393), Expect = 0.0
 Identities = 405/409 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcccctgtgagatatctagtcctgcctcagctcactggccataggcttttttattgatag 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcccctgtgagatgtctagtcctgcctcagctcactggccataggcttttttattgatag 260

                                                                       
Query: 61  gtgatgcttccatacagcatataatagattctctctatacattatccttctagacttctc 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgatgcttccatacagcatataaaagattctctctatacattatccttctagacttctc 320

                                                                       
Query: 121 acctcatgccaagcaaatatacaaaagtaaataaaagtaaaatatctaatcaggattaaa 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acctcatgccaagcaaaaatacaaaagtaaataaaagtaaaatatctaatcaggattaaa 380

                                                                       
Query: 181 ccatctacatagaaagtccaaaataatgtgtgaaaatttaactaaaggtagaggaggaaa 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 ccatctacatagaaagtccaaaataatgtgtgaaaatctaactaaaggtagaggaggaaa 440

                                                                       
Query: 241 taaacaataaagctggttaatcccaccccaggatcctgaactgggtaaactgggtaacta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaacaataaagctggttaatcccaccccaggatcctgaactgggtaaactgggtaacta 500

                                                                       
Query: 301 gatggcagcagagaacctgctgtcagagagcctgacaacacttcctgggaactaacttcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatggcagcagagaacctgctgtcagagagcctgacaacacttcctgggaactaacttcc 560

                                                            
Query: 361 cgtctatataaaacaggaggggccattccttctcatttccatgagtgtc 409
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cgtctatataaaacaggaggggccattccttctcatttccatgagtgtc 609


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)