BAC Information

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BAC

Clone NameMSMg01-455G21
Chromosome11 (Build37)
Map Location 67,972,978 - 68,139,135
singlet/doubletdoublet
Overlap geneStx8, Ntn1
Upstream geneMyh2, Myh1, Myh4, Myh8, Myh13, Gas7, Rcvrn, Glp2r, LOC544792, Dhrs7c, LOC100041899, Usp43, Wdr16
Downstream genePik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455G21.T7 (MSMg01no455_g21.b1)MSMg01-455G21.TJ (MSMg01no455_g21.g1)
ACCAG541971AG541972
length754739
length of high quality
(start - end)
154 (70 - 223)237 (76 - 312)
definitionCHROMAT_FILE: MSMg01no455_g21.b1 PHD_FILE: MSMg01no455_g21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:56 2005CHROMAT_FILE: MSMg01no455_g21.g1 PHD_FILE: MSMg01no455_g21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,138,982 - 68,139,135)(67,972,978 - 67,973,214)
sequence
CCACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAGAGGATCCG
CGGAATTCAAATTACAATGTGTCTCATTTTCTGTTCAACACAAAGCTGAA
AAATACATATTCCATTCATTGTAAGTTGGAGATTGTATGTGAATTTTTTA
ACCTGTGTGGTATTTGCCTTTTTATTTGTATTTGTGGATTTTGGTGTTTT
GGGTTTTGTTTATTTGTTTGGAGGCAGGATCTCATGTAACCCGGTTTGTT
CGCTAACTAATTAAACTTCCTCCCAGGGCTCTGTGATTACGGCATGCGCT
GCCACACCTGTTCTTTTTTTTTTTTAAGGCAGAGTCTCTTGTATTTCAGG
TGTCTTTTTTACTGTTCAGCTGTTGTGATGATACCCCATGGCCTATGTTA
ACTTATATAAGACAGCACTCACTTATTTTCTTGCTTACCTACCCATGATT
TTGTTCAGTATGGCTGTTTGCTTTCATTTCCGTTATTTCTTGACCTTTAC
CCAATTTGCCACTTCTGTTCTTGCTTATTTTTACCATTGATACATCCTTT
GTTTCATTCCTGTCTCATATCCTCTTTATCTCTCTCCTTCTATCCCCCCA
TGTTATTCTCGCTTTCTCTCCTTTGTTTCTATTTTGCTTTGTCACTTATT
GTCTGCTTCCTCTTTTTGTTCGGTCTTTTTGCTGTTTATCTTTTTTTCTT
TTGCTTTTTGCTTTCGCCCTGTTTTGTCATGTGTGTTTTTGTTGTTTTTC
NCTG
NACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTGTGTAACCCAAGCTGACCTCAG
ACTGAGAGGTCAGCCTGCCTCTGCCCAAAGAGTGCTGAGATTAAAGGTGT
GGAAGACATATTTTGGTGTAGTTGAAGTTTCAGATGTGAAAGTGTTGCTG
TTGGAATTTATGAAACAAATGCAAAGAAGACCACATTCTAGTGGTTACTA
TTTTCCTATTTCAGAAAAAATTTAGAAATTTACAGGTCTGGTAGCTGATC
CCTGTCCTTTAATCTGTTTCTCATAGATGATGACTCTCACCCAATAAATG
AAAGAATTCCCTGTTTGGAAAGTTAAATGAAAATCAGCCGAGCGGGCGTG
CTTGCTAGTCTTAAAGAAGGTTCTCCATTGTAGATCAGCCGGGTCTGGCA
GTGAATGTGTGCACTATCAGAGTCCGGTGACTTAGGGGGATGGATTTCCC
AGGGTTTAATCATTTCATAAGGCCTCTGAGTGTGACTTTTTCCCCAATAA
TCTACTTATCTCAGTAATTTACCCCTCCTACTGCATTGCGAGGAAAATGA
ATTTCCCAAGGTTGTTTGCATGAATAAGAGCTTGGGGATTTTTTTTATCC
TTCCATATACCCTGAATTCCCTTTGTACTTTTCTTGTACTATTGGGTCTC
CCATTTTTCACCTGTTTAGTTTATACTTCCCTATTGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_g21.b1 MSMg01no455_g21.b1 CHROMAT_FILE:
MSMg01no455_g21.b1 PHD_FILE: MSMg01no455_g21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:56 2005
         (154 letters)



>mm_chr11_68138782_68139335
          Length = 554

 Score =  290 bits (150), Expect = 2e-83
 Identities = 153/154 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtctcattttctgttcaacacaaagctgaaaaatacatattccattcattgtaagttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tgtctcattttctgttcaacacaaagctgaaaaatacatattccattcattgtaagttgg 295

                                                                       
Query: 61  agattgtatgtgaattttttaacctgtgtggtatttgcctttttatttgtatttgtggat 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ggattgtatgtgaattttttaacctgtgtggtatttgcctttttatttgtatttgtggat 235

                                             
Query: 121 tttggtgttttgggttttgtttatttgtttggag 154
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 tttggtgttttgggttttgtttatttgtttggag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 154
Length of database: 554
Length adjustment: 8
Effective length of query: 146
Effective length of database: 546
Effective search space:    79716
Effective search space used:    79716
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no455_g21.g1 MSMg01no455_g21.g1 CHROMAT_FILE:
MSMg01no455_g21.g1 PHD_FILE: MSMg01no455_g21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:56 2005
         (237 letters)



>mm_chr11_67972778_67973414
          Length = 637

 Score =  443 bits (229), Expect = e-129
 Identities = 235/237 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgtgtaacccaagctgacctcagactgagaggtcagcctgcctctgcccaaagagtgc 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgtgtagcccaagctgacctcagactgagaggtcagcctgcctctgcccaaagagtgc 260

                                                                       
Query: 61  tgagattaaaggtgtggaagacatattttggtgtagttgaagtttcagatgtgaaagtgt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 tgagattaaaggtgtggaagacatattttggtgtagttgaagtttcagatgtgaaattgt 320

                                                                       
Query: 121 tgctgttggaatttatgaaacaaatgcaaagaagaccacattctagtggttactattttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctgttggaatttatgaaacaaatgcaaagaagaccacattctagtggttactattttc 380

                                                                    
Query: 181 ctatttcagaaaaaatttagaaatttacaggtctggtagctgatccctgtcctttaa 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctatttcagaaaaaatttagaaatttacaggtctggtagctgatccctgtcctttaa 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)