Query= MSMg01no455_i17.b1 MSMg01no455_i17.b1 CHROMAT_FILE:
MSMg01no455_i17.b1 PHD_FILE: MSMg01no455_i17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:05 2005
(319 letters)
>mm_chr11_78630681_78631399
Length = 719
Score = 576 bits (298), Expect = e-169
Identities = 302/304 (99%), Gaps = 2/304 (0%)
Strand = Plus / Plus
Query: 1 attagccatctcgccctgcttccccattatcactgatttgtgtgataagtgacaattata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attagccatctcgccctgcttccccattatcactgatttgtgtgataagtgacaattata 260
Query: 61 cgtgtcataagtatactcctttttgctgaagacaagagatcttatgtgtgatgcaaataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgtgtcataagtatactcctttttgctgaagacaagagatcttatgtgtgatgcaaataa 320
Query: 121 gggctcacagaatgctaattttgtaatgagccgatgcatttttcaaggagtttatcgtct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggctcacagaatgctaattttgtaatgagccgatgcatttttcaaggagtttatcgtct 380
Query: 181 agagggggaataaaacatgtgcataaataattagaatgcaaagcagaaaactggtgtgtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagggggaataaaacatgtgcataaataattagaatgcaaagcagaaaactggtgtgtc 440
Query: 241 ctgagacagtacagaaagaattatggagagagagagggagagagagagag--agggagag 298
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 ctgagacagtacagaaagaattatggagagagagagggagagagagagagggagggagag 500
Query: 299 agag 302
||||
Sbjct: 501 agag 504
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space: 220100
Effective search space used: 220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no455_i17.g1 MSMg01no455_i17.g1 CHROMAT_FILE:
MSMg01no455_i17.g1 PHD_FILE: MSMg01no455_i17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:05 2005
(566 letters)
>mm_chr11_78809737_78810702
Length = 966
Score = 1046 bits (541), Expect = 0.0
Identities = 562/573 (98%), Gaps = 7/573 (1%)
Strand = Plus / Minus
Query: 1 tcccacgggttgagggaccgactgagcccagcctgtggcac-------aaaagaaaaatg 53
||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 757 tcccacgggttgagggaccgactgagcccagcctgtggcacaaaagaaaaaagaaaaatt 698
Query: 54 tgtttcagatgtggcactggaaactttccatcagaaagttttgcacgggtgaattctagt 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 tgtttcagatgtggcactggaaactttccatcagaaagttttgcacgggtgaattctagt 638
Query: 114 ccagccaatagctacataatgagaccttgtctccaaaataaataaataaatacataaata 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 ccagccaatagctacataatgagaccttgtctccaaaataaataaataaatacataaata 578
Query: 174 aaatgaatagcttacttccaatagaaatgtgtttctggtgattctggagacaataaacca 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 aaatgaatagcttacttccaatagaaatgtgtttctggtgattctggagacaataaacca 518
Query: 234 tctgattttattctttacaggaaaaaacttgaagagggctgggcagatgttcttgtgtag 293
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tctgattttaaactttacaggaaaaaacttgaagagggctgggcagatgttcttgtgtag 458
Query: 294 cacacataaagcctggagtttggtgccagcccgtgtcccccaccacacaatgtctaaatg 353
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 cacacataaagcctagagtttggtgccagcccgtgtcccccaccacacaatgtctaaatg 398
Query: 354 agatcaaactatctccagtttgtttgtttgttggagatatgatcttctgtagcccaggat 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 agatcaaactatctccagtttgtttgtttgttggagatatgatcttctgtagcccaggat 338
Query: 414 gacctttagggtttgtaataaagcttaggatgaccttgaactttttctttttaagacaag 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gacctttagggtttgtaataaagcttaggatgaccttgaactttttctttttaagacaag 278
Query: 474 gtcccttgtagcccaggttggtctagaactggaaatgtaaccaatgaccttggagtcctg 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gtcccttgtagcccaggttggtctagaactggaaatgtaaccaatgaccttggagtcctg 218
Query: 534 attctcctgtctccatccctcaaatgttgggct 566
|||||||||||||||||||||||||||||||||
Sbjct: 217 attctcctgtctccatccctcaaatgttgggct 185
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
