BAC Information

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BAC

Clone NameMSMg01-455K06
Chromosome11 (Build37)
Map Location 25,104,529 - 25,251,321
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042282
Downstream gene5730522E02Rik, LOC100042328, LOC100042345
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455K06.T7 (MSMg01no455_k06.b1)MSMg01-455K06.TJ (MSMg01no455_k06.g1)
ACCAG542133AG542134
length719701
length of high quality
(start - end)		617 (50 - 666)538 (58 - 595)
definitionCHROMAT_FILE: MSMg01no455_k06.b1 PHD_FILE: MSMg01no455_k06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:12 2005CHROMAT_FILE: MSMg01no455_k06.g1 PHD_FILE: MSMg01no455_k06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(25,104,529 - 25,105,141)(25,250,814 - 25,251,321)
sequence
NNGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACCTATTTTTTCCTTTGAATATGTTTCCTATAGGTTTTTAT
TACTCGACATATATCAAGATAAGGCAAAACTCTCCAGGCTTTTTAGAATA
TCTTTCTTTAATTCACTAATAGATTTTTCAGTTAATGAAATAATATAATC
TATAAAATCCAATGAGATTTTACTTTTAAAATAAATTAATTATACAATAT
CTGCTATTGAATTATCCTTGAACTTCCTTAATCATTCATTGCTTATCATA
TATATTTAATGTACTATTACATAAGTCTAATATTGCATATGTAATTTTGC
AGTGTATATATTTAAAGTCAAGAAAAGAAACATTTATCTTGGAATCATCA
CAACTGATTATTTCATGTTTATATACTTATAAGTGAGTTTCTTATTTATC
TTTTGGATCAAAGGTAAATTCTTCTCTTTCTGCTATCTACTTAAATCAAC
AGCTATAAACCAAAGCAATGCATTCTTGAAAGTTCCTTTGAGAAATATCT
CTTTGCATTAGGAAATTATATCATACAGCTTACCACTATTTTACTTATAA
GAATAATACTATAAAGCTAAGGTGATGTCTTGAATATATACATGAAAATC
TGTAATTAAAAGACCTAATTGAAAAATCAGTAATAAATATTAGTACATAA
TTCTCAGAAGAACAGAGGA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXATCCTCCCCCACAAATATTATTTAAATGCCCATGATATTCTGG
GTAAAACACCCTTAGGTGGGTGATTGGTAAATTACACTCTCAGAATTTAT
GACTTTAAGAAGACACTAAGTTTTCAAATGGTTCGGAACTGACCTTAGAC
TGCCTGTTGATGACCAAGCATTCATGAACTGAGAGTTTACTTCATTCTGT
ACATTGCATCTGTTTGCTGATTTTTTAAATTCAATTCTATTGTTTTTTTT
TTACATCTGTCAGCACGTCAATAATTTGTTATAATTTTAAGAAAATGCAT
TTAAAAAATAATAGTAAGGCAAGAAAAGAAAAAATGAAAAAAGAAAAGAA
TTATTGCTCCATCTGATCTAAAAGTCATTTAAGACCTGTACATCAACACC
ATTCAGATACCATGGCCCAAAGTGCATTGGCCCACAGAAAAGAATACAGC
CACCCACACCTTTGGACTGGCTGGCTTGTATGGGCTCAGAATAGCTCTAG
GATGACACCATAGGCTCAAGTCTCTATTTCCCTGGATCATCTGGTTGACC
TCAAAAGTAAGGAGAGAGGTGCAGTGACTGATCTCCCTAAAGAGAGGAAC
AGTCCAGGCTCCCCAAACTTATATCTGGATTCTAGGAGACCTGCAAAATG
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_k06.b1 MSMg01no455_k06.b1 CHROMAT_FILE:
MSMg01no455_k06.b1 PHD_FILE: MSMg01no455_k06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:12 2005
         (617 letters)



>mm_chr11_25104325_25105341
          Length = 1017

 Score = 1170 bits (605), Expect = 0.0
 Identities = 611/613 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacctattttttcctttgaatatgtttcctataggtttttattactcgacatata 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacctaatttttcctttgaatatgtttcctataggtttttattactcgacatata 264

                                                                       
Query: 65  tcaagataaggcaaaactctccaggctttttagaatatctttctttaattcactaataga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcaagataaggcaaaactctccaggctttttagaatatctttctttaattcactaataga 324

                                                                       
Query: 125 tttttcagttaatgaaataatataatctataaaatccaatgagattttacttttaaaata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttttcagttaatgaaataatataatctataaaatccaatgagattttacttttaaaata 384

                                                                       
Query: 185 aattaattatacaatatctgctattgaattatccttgaacttccttaatcattcattgct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aattaattatacaatatctgctattgaattatccttgaacttccttaatcattcattgct 444

                                                                       
Query: 245 tatcatatatatttaatgtactattacataagtctaatattgcatatgtaattttgcagt 304
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 445 tatcatatatatttaatgtactattacataagcctaatattgcatatgtaattttgcagt 504

                                                                       
Query: 305 gtatatatttaaagtcaagaaaagaaacatttatcttggaatcatcacaactgattattt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtatatatttaaagtcaagaaaagaaacatttatcttggaatcatcacaactgattattt 564

                                                                       
Query: 365 catgtttatatacttataagtgagtttcttatttatcttttggatcaaaggtaaattctt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 catgtttatatacttataagtgagtttcttatttatcttttggatcaaaggtaaattctt 624

                                                                       
Query: 425 ctctttctgctatctacttaaatcaacagctataaaccaaagcaatgcattcttgaaagt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctctttctgctatctacttaaatcaacagctataaaccaaagcaatgcattcttgaaagt 684

                                                                       
Query: 485 tcctttgagaaatatctctttgcattaggaaattatatcatacagcttaccactatttta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tcctttgagaaatatctctttgcattaggaaattatatcatacagcttaccactatttta 744

                                                                       
Query: 545 cttataagaataatactataaagctaaggtgatgtcttgaatatatacatgaaaatctgt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cttataagaataatactataaagctaaggtgatgtcttgaatatatacatgaaaatctgt 804

                        
Query: 605 aattaaaagacct 617
           |||||||||||||
Sbjct: 805 aattaaaagacct 817


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no455_k06.g1 MSMg01no455_k06.g1 CHROMAT_FILE:
MSMg01no455_k06.g1 PHD_FILE: MSMg01no455_k06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:12 2005
         (538 letters)



>mm_chr11_25250814_25251751
          Length = 938

 Score =  944 bits (488), Expect = 0.0
 Identities = 503/508 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcctcccccacaaatattatttaaatgcccatgatattctgggtaaaacacccttaggt 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 508 atcctcccccacaaatattatctaaatgcccatgatattctgggtaaaacacccttaggt 449

                                                                       
Query: 61  gggtgattggtaaattacactctcagaatttatgactttaagaagacactaagttttcaa 120
            |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 448 aggtgattggtaaattacactctcagaatgtatgactttaagaagacactaagttttcaa 389

                                                                       
Query: 121 atggttcggaactgaccttagactgcctgttgatgaccaagcattcatgaactgagagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 atggttcggaactgaccttagactgcctgttgatgaccaagcattcatgaactgagagtt 329

                                                                       
Query: 181 tacttcattctgtacattgcatctgtttgctgattttttaaattcaattctattgttttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 328 tacttcattctgtacattgcatctgtttgctgattttttaaattcaattctattgctttt 269

                                                                       
Query: 241 tttttacatctgtcagcacgtcaataatttgttataattttaagaaaatgcatttaaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 268 tttttacatctgtcagcacgtcaataatttgttataattttaagaaaatacatttaaaaa 209

                                                                       
Query: 301 ataatagtaaggcaagaaaagaaaaaatgaaaaaagaaaagaattattgctccatctgat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ataatagtaaggcaagaaaagaaaaaatgaaaaaagaaaagaattattgctccatctgat 149

                                                                       
Query: 361 ctaaaagtcatttaagacctgtacatcaacaccattcagataccatggcccaaagtgcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 ctaaaagtcatttaagacctgtacatcaacaccattcagataccatggcccaaagtgcat 89

                                                                       
Query: 421 tggcccacagaaaagaatacagccacccacacctttggactggctggcttgtatgggctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88  tggcccacagaaaagaatacagccacccacacctttggactggctggcttgtatgggctc 29

                                       
Query: 481 agaatagctctaggatgacaccataggc 508
           ||||||||||||||||||||||||||||
Sbjct: 28  agaatagctctaggatgacaccataggc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space:   489984
Effective search space used:   489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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