BAC Information

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BAC

Clone NameMSMg01-455O16
Chromosome11 (Build37)
Map Location 69,059,742 - 69,060,306
singlet/doubletsinglet
Overlap genenone
Upstream geneNtn1, Pik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e
Downstream geneCntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455O16.T7 (MSMg01no455_o16.b1)MSMg01-455O16.TJ (MSMg01no455_o16.g1)
ACCAG542342AG542343
length740812
length of high quality
(start - end)		567 (70 - 636)188 (59 - 246)
definitionCHROMAT_FILE: MSMg01no455_o16.b1 PHD_FILE: MSMg01no455_o16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:33 2005CHROMAT_FILE: MSMg01no455_o16.g1 PHD_FILE: MSMg01no455_o16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGA
ATTCAGTTATTCCTAAAACAAAACAAAACAAAACAAAAACAAACAAGCAA
ACAGATACAATACAACACAACACTGAAGCTAAAGTAGAGGAGGGTAGAAA
CCAGGAGATTCCATTCCACTACAGTTTATGCTGGCTACAGAACAGTGAGG
AAGTGACATAGAAATATATACATGTCCACTTAAATGGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGAACCAGGAGGCCCTGGC
TTCTACCATGTCCTGCATAGCTGGGTCCTAACTGGGACAATGACAGACAC
TCTTACAGAGCGGCTGGGACTAGGAGACTGTGCTCACCCTGACAGAGGAC
ACTCACTACAAGACAGCCTGGGTGAATTTGAATTTATTACATACAAAGCA
GGTAAGAGTTGGCTGGTTTCAGTAGGCGTCTCTGTGGAGAGGCGGTGACA
GACTTCAAACATCTAAGAAAAGGAACCCGCAGTGACCTCTTGTCCACACT
GCCGACTTTCCACCATGGACCAGTGGAAGGATCCGCCAGTTCCCTGAGCC
TGAGGCAGGAGACTGCTTTGCCAGTTCCCATGAGTCTGGGACTGGGATCT
CGGCAATAGGACACTCGGGGTTTCCTCTGCTTCCTGCAGGGTTAAGCTCC
CGGCACCATCTACTCATCCAGTAGTAATTTAATATTATCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXAGAATTCTGTCATTTGATTTTTTTTTAAAAAATCATATGTTT
AATAGATAATACAACACATGTGGCGGTACTCGCCTTTAATCCCAGCACTT
AGAAGAAAAGACAGGCAGATCTCCATGAGTTGGAGGTCAGCCTGGTCTAT
ATAATGAGTTCTAGGACAGCCATGGAGGGAGGGGGGGGGGAGAGANATNN
TTTTTCACNNTGNTTTGTTTTGNTTTTNNGNGTNNGGGGGGTTTTTTTTT
NGTTGCGNGNGTTGGTGTTTTGTGCGTGCTTTTTTTTTTCTCTGCCCCTG
TTCCGTGTTTTCGGGGTTGTTTTAGTTTGATTTTTTTTTTTGCTTACCCC
CCACTAGGGTACTCGCCCCCTCGTTGTGTTTTTTGTTTTGCGCCCCCCTT
TGACTAGTGTGTTTTCTCTCCATACCCTGATATTATTCGCTTCTCTCTTT
TTTTCCTCTTTTTTATTTTTTTCTGTTACTGTCGGCTTTATCGGTTTTTT
GTCGTTCTGCCCGTTGATATTTTTTTTTTCTATTCTCTCTTTTTCTCTCC
TTTTTCCCCTTGTTTGATGCCTTTCTTGTTGCNTATTGAACGCCCTGCTT
TCTCTGTGTTGTCCTTGTATTCCGCCTTGTCTACGTTTTTCTGCGCGGCC
AGTTCGCGTATTTTTTGATTTCGCCTTGATCTTATCGCGTTATGCTGTAA
TTATATCGTCCCTTTGACGCTTTTTGTGTCCTGGGTTTTTGTTTTATTTC
TATTGACTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_o16.b1 MSMg01no455_o16.b1 CHROMAT_FILE:
MSMg01no455_o16.b1 PHD_FILE: MSMg01no455_o16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:33 2005
         (567 letters)



>mm_chr11_69059542_69060508
          Length = 967

 Score =  969 bits (501), Expect = 0.0
 Identities = 550/567 (97%), Gaps = 2/567 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaacaaaacaaaacaaaaacaaacaagcaaacagatacaatacaacacaacactgaagc 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaacaaaacaaaataaaaacaaacaagcaaacagatacaatacaacacaacactgaagc 260

                                                                       
Query: 61  taaagtagaggagggtagaaaccaggagattccattccactacagtttatgctggctaca 120
           |||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||
Sbjct: 261 taaagtagaggagggtagaaaccaggagattccattccactatagtttatactgactaca 320

                                                                       
Query: 121 gaacagtgaggaagtgacatagaaatatatacatgtccacttaaatggagagagagagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaacagtgaggaagtgacatagaaatatatacatgtccacttaaatggagagagagagag 380

                                                                       
Query: 181 agagagagagagagagagagcgagagagagagagaaccaggaggccctggcttctaccat 240
           ||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||
Sbjct: 381 agagagagagagagagagag--agagagagagagaatcaggaggccctggcttctaccat 438

                                                                       
Query: 241 gtcctgcatagctgggtcctaactgggacaatgacagacactcttacagagcggctggga 300
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 439 gtcctgcatagctgggtcctaattgggacaatgacagacactcttacagagcggctggga 498

                                                                       
Query: 301 ctaggagactgtgctcaccctgacagaggacactcactacaagacagcctgggtgaattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ctaggagactgtgctcaccctgacagaggacactcactacaagacagcctgggtgaattt 558

                                                                       
Query: 361 gaatttattacatacaaagcaggtaagagttggctggtttcagtaggcgtctctgtggag 420
           ||| ||||||||||||||||||| |||||||||||||||| |||||| |||||||||| |
Sbjct: 559 gaacttattacatacaaagcagggaagagttggctggttttagtaggggtctctgtggcg 618

                                                                       
Query: 421 aggcggtgacagacttcaaacatctaagaaaaggaacccgcagtgacctcttgtccacac 480
            ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 619 tggcggtgacagacttcaaacatctaggaaaaggaacccgcagtgacttcttgtccacac 678

                                                                       
Query: 481 tgccgactttccaccatggaccagtggaaggatccgccagttccctgagcctgaggcagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tgccgactttccaccatggaccagtggaaggatccgccagttccctgagcctgaggcagg 738

                                      
Query: 541 agactgctttgccagttcccatgagtc 567
           ||||||||||||||| |||||||||||
Sbjct: 739 agactgctttgccagctcccatgagtc 765


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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