BAC Information

Click to search

BAC

Clone NameMSMg01-456J06
Chromosome11 (Build37)
Map Location 102,214,161 - 102,214,523
singlet/doubletsinglet
Overlap geneSlc4a1
Upstream geneLOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf
Downstream geneRap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43, Adam11, Gja7, Higd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1, Dcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456J06.T7 (MSMg01no456_j06.b1)MSMg01-456J06.TJ (MSMg01no456_j06.g1)
ACCAG542847AG542848
length741768
length of high quality
(start - end)		240 (73 - 312)363 (79 - 441)
definitionCHROMAT_FILE: MSMg01no456_j06.b1 PHD_FILE: MSMg01no456_j06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:26 2005CHROMAT_FILE: MSMg01no456_j06.g1 PHD_FILE: MSMg01no456_j06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTTTTCCTTTAATAGGAGTGGGTATGGAAGTGGTGCTTGCCA
CTGTATATGTAAGGAGGGTAAAGGACAACTTTGGGGAGTCAATTCTCACC
ACGTGAGACAAATGTGTATGGATATTTTATTTATATATATATATGTCTGT
GCCGCATGTGTACAGGTGGGCTTTAAACCCCTAAAACTTACAGTTCATAT
GATTGGAAGGTACTATGTAGGTGCTGGGAACCAAACCTGGATTCTCTGCA
AGAGTGCTTCTAATTATTTTATCCATCTCTCTAGTCCAGAATAGTTTCCT
TTTTAAAGGACTATTCATAATAAACTGCAGCTTAGAACATGTAAGTTAAG
CATTCAGAAATAAAATAGGCAAATTAGAAGATAAAAAATAGATCTCGGGG
GGGCTGGTGAGATGGCTCACAGGGTAAGGGCACTGACTGCTCTTCCGAAG
GTCCTGAGTTCAAATCCCAGCACCCACATGGTGTTTCAGAACCACCCGCA
AGGAGATCTGCTGCGCTCTTTTGGCCGTCTGAAGACAGCTTTCACGCACT
TATTTATTATCCCTCACTCCCTCTTTGCCAAACACTATCACTAATTCTCT
CTTCCTTTGACCCAATCCCCATAGAAACAATCTTGTTATTCCCTATCCAA
TGATCTCGAGACCCAATTTTTCAATTCCTCCCTTACGTGCC

TCCTCGATGATANGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGCTCTGAGGGCTAGAAGTCT
CTGGAATACCCTCAGGCATTCTTGCTAAATCCTGGGACTTTACCTTCAGG
GAGCCTTGACTGTTCAGCACCCTCACCCCACCCTCACCGCCATCCCCACT
CTTCAAGCCCCTCCCACCATCCAGCAGTGAAGCTCATAGCTCCCAGTTTA
CAAGGTGTTCAAATGATGCCACCCCAGGGGCCACAAGACTCAGACCTGCC
TCTGATACTCCAACACTCCCATCCCCTCGCAGAGAGCCACCAGCCAGTCT
CCTGCTGGCCCAGAGCCTGCTTCCCTCCCTGCCTCCAGCCCTCCCTGGCC
AAGCCTCTCTCCTTGCTCTTACGTGGTGATCTGAGACTCAAGGATAATGA
GAATGAAGACAAGCAGGGCAGGCAGAACGGAGGCAAACATCATCCACGTG
GGGAAAAGTCTATACAGTTCCAGAGCTTGGATGACCCATCCCCGGGCGGA
CGATTTGTTACCCCTTGAATGTCTCCTTTCTACTCATAATTTCTGTGTAA
ATAAAATGTTCGTGACAAACTGGCGACCATAAGTTCATTATTTAAATTTG
GCTCCTTTTATCCTAACTTTTTTGTTGCCACTTAATTCTTTTCTCAATTT
GTTTTCTCCAAACCCTCTTTTTCCTTCCTTTTTTTTTTCTTTCTCCTTAA
ACCTTTCCCTTTTTTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_j06.g1 MSMg01no456_j06.g1 CHROMAT_FILE:
MSMg01no456_j06.g1 PHD_FILE: MSMg01no456_j06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:27 2005
         (363 letters)



>mm_chr11_102213961_102214723
          Length = 763

 Score =  663 bits (343), Expect = 0.0
 Identities = 358/363 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggctctgagggctagaagtctctggaataccctcaggcattcttgctaaatcctgggac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggctctgagggctagaagtctctggaataccctcaggcattcttgctaaatcctgggac 260

                                                                       
Query: 61  tttaccttcagggagccttgactgttcagcaccctcaccccaccctcaccgccatcccca 120
           |||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||| 
Sbjct: 261 tttacctttagggagtcttgacttttcagcaccctcaccccaccctcaccgccatccccg 320

                                                                       
Query: 121 ctcttcaagcccctcccaccatccagcagtgaagctcatagctcccagtttacaaggtgt 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 ctcttcaagcccctcccaccatccagcagcgaagctcatagctcccagtttacaaggtgt 380

                                                                       
Query: 181 tcaaatgatgccaccccaggggccacaagactcagacctgcctctgatactccaacactc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaaatgatgccaccccaggggccacaagactcagacctgcctctgatactccaacactc 440

                                                                       
Query: 241 ccatcccctcgcagagagccaccagccagtctcctgctggcccagagcctgcttccctcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccatcccctcgcagagagccaccagccagtctcctgctggcccagagcctgcttccctcc 500

                                                                       
Query: 301 ctgcctccagccctccctggccaagcctctctccttgctcttacgtggtgatctgagact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgcctccagccctccctggccaagcctctctccttgctcttacgtggtgatctgagact 560

              
Query: 361 caa 363
           |||
Sbjct: 561 caa 563


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 763
Length adjustment: 9
Effective length of query: 354
Effective length of database: 754
Effective search space:   266916
Effective search space used:   266916
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |