BAC Information

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BAC

Clone NameMSMg01-457C12
Chromosome11 (Build37)
Map Location 46,288,153 - 46,288,557
singlet/doubletsinglet
Overlap geneHavcr2
Upstream geneLOC633082, Clint1, Lsm11, Thg1l, Sox30, LOC667037, LOC100039624, Adam19, 9530066K23Rik, Cyfip2, C030019I05Rik, LOC100038833, LOC100039577, Itk, OTTMUSG00000005491, Crsp9, LOC100039730
Downstream geneLOC210535, LOC675689, LOC435256, BC053393, Dppa1, EG237749, Timd2, LOC620678, Havcr1, Timd4, Sgcd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457C12.T7 (MSMg01no457_c12.b1)MSMg01-457C12.TJ (MSMg01no457_c12.g1)
ACCAG543289AG543290
length1,612733
length of high quality
(start - end)
---503 (80 - 582)
definitionCHROMAT_FILE: MSMg01no457_c12.b1 PHD_FILE: MSMg01no457_c12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:15 2005CHROMAT_FILE: MSMg01no457_c12.g1 PHD_FILE: MSMg01no457_c12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATAATTATTATATAGAGACAGATACTATCTTCATCACTCGTTATCCACC
CGAATGGCATTAACTTCANCGCTACTACTACTAGAGATGCTCGCTATTTG
TCAGAGCATTTTCTTCTCTNTAACCTGCGAGGCGNATAGAGTAGAATAGA
TGGTGATAAGCGAGTCCCAGCACGACCATGACTATAATGCGATGATGATT
TGCACTACAGNATAGATCTCATCGTCATNCCTTATACTATNTATGATCTA
GATGAGCTTGCTGGCTATGTGTCTGGCGCGCACTATACGCTCACTGCTGG
ACTATAGCGACATCGCTTCCCTGCACCATTTCCAGCCGATATCGTGCTAT
GGACGTCAGCGTATCCGTCACACATCATATAATATCGATAGTAATGCACA
CATTATCGACTGCGACCGATCATTAGACCACCACAAATCGAACTAGCATA
TCTGTCTCTCGCAGAACTATACATATCGTCTCTATCTGTATGATGCGAGG
CGTGCAGAGCGTCGGTGAGATGAGAGGGAAGGCGGCAGGTGAGACGATGT
GCGAGCGCGGAGTAGGCGTGGAGGAATGCACGCGGAGTGCGCGTCTACCG
AGCATATACCGGTAGCTGTACCGGAGGCGAGTATAGAGACAGTCGGTGAT
GATAACGCTACCGCACGATGACGATCGATCTGAGTACCACGTAAGNAAGA
TGATATAGCGATATNGTCGATGGAGATGAGAGTGACATACGCAGCGCGAG
AAGAAAGAAGATGCAGGACAATGCATGTCGCAAAACTCATNGCTATTCGC
ATACGCAGCGCCGCCGCGCTCTGTCGCCATACGCGTCCGCTGTCGCGTGT
GATCGATGGAGTATCTCATCGTCGTTGTGATATACTATACGTACTCTCAT
ATCATCGCGCTAGTTAACGACGTATGTGCGAGCTGCCGGCTGCTTGCTGT
CTATCGTCAGTCGCTGCGATAGTATATAGTGCTAGACTGCGCAATGACAC
GTCACGTCGTCTCGCATATATACGAGACGTAACCCGAAGTGCGGATACTG
CGAGAGCGAAGTCAGACCTGAGNGCGATGAACAGATGTATACAATGCTGA
AGACACTGACGCCGATGACTACTGATATAGTGCGCTCTTANGCTGAACTG
GATGCNAAGATACATATATCACGCGTGTCTGCTGTACGACACACTGGCAG
ATACTCACCTTACCCGCGATCATGATGTGCGCCAAGCGCAGATGAGCGGC
GCTGTGTNATACCTACACAGAGCCACAGAGAGATAGATGAACACNGCTAA
TCGGCGCAGAGATGACCANGTGCCAGCATACGNCGGACACTTATGAGCGT
ACTCGCTCTCTATACGTAGAGCGCATGCATCTACGCTGTCGCTATAGCTG
ATACCTCACTGAGTGTTGCGCGCAACGCCGTCTCCGTCGTGCGTCGCGTG
CCGAGATTGNATGATGCGACTGCATGTGTCGCGCATGACTATGTGCTATC
TACGTATGCAAGCGTGCTGTCNGTATGCGACGTGTATGCACAGTACTACG
CNACATAATGACCTGTGCGTCTGATGTGAGGTTTCGCACTCACAGCACGC
CCGAGGTGATGN
NNNNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGCTATGCTTAAAAAAATG
TACTTACTGTCTTTTCTAAGAATCAGGGGATAGGGTCATAAAACACTGAC
TCATGAGATAATCAAAAGGGAACCTAGGGTGGACTACTGAATTGCTATGC
AAATAAAAGACTGGGCTTTGGTCTAAGAGCTGAGCTTTCTGGAAATCTCT
GGAGAGCTGTCTGGAGCAGAACACAAGGCTGTCAGCTTGTACCCAGGATT
GACTTCAAGTTGTTCTTCCATCATTCTTTTTTTCCCTTCTTCAGAAACCC
TCTCTAAGCCAAGGGTGGTTCTTGGCATAGAATAGACTGATTGGAGGTGA
GAGTTGCTAGTGAAATTTGGTCTTACCTTAGAACGAATTAAATCAAATGA
CCAGTTCTGTCTTATGACTATGTTAAAAATAATATCAGTGTATAGCTCTT
ATTTAACAAATATTGCGAGACTTATTCTGTATGTGCAGCAGTTTGATAGA
CACCAGGGACACACAGGGATAGTTGTGAGCTCTGACTCCAAGAAGCACAC
ATCCTAATGAGGAAAGAAGGATGAAGAGTGTAAGTGGAAAAGTACCTAAC
ACTTTTCCCCTTTTTTTTTTTTTTTTATTATCTCCTTTATTTCCACTTTT
TTTTCTTATTCATATTCCTTTTTTTCCCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_c12.g1 MSMg01no457_c12.g1 CHROMAT_FILE:
MSMg01no457_c12.g1 PHD_FILE: MSMg01no457_c12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:15 2005
         (503 letters)



>mm_chr11_46287655_46288557
          Length = 903

 Score =  737 bits (381), Expect = 0.0
 Identities = 398/411 (96%), Gaps = 13/411 (3%)
 Strand = Plus / Minus

                                                                       
Query: 100 gtggactactgaattgctatgcaaataaaagactgggctttggtctaagagctgagcttt 159
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 gtggactactgaattgctatgcaaataaaagactgggctttggtctaagagctgagcttt 844

                                                                       
Query: 160 ctggaaatctctggagagctgtctggagcagaacacaaggctgtcagcttgtacccagga 219
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 ctggaaatctctggagagctgtctggagcagaacacaaggctgtcagcttgtacccagga 784

                                                                       
Query: 220 ttgacttcaagttgttcttccatcattc-------tttttttcccttcttcagaaaccct 272
           ||||||||||||||||||||||||||||             |||||||||||||||||||
Sbjct: 783 ttgacttcaagttgttcttccatcattcccaaaca------tcccttcttcagaaaccct 730

                                                                       
Query: 273 ctctaagccaagggtggttcttggcatagaatagactgattggaggtgagagttgctagt 332
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 ctctaagccaagggtggttcttggcatagaatagactgattggaggtgagagttgctagt 670

                                                                       
Query: 333 gaaatttggtcttaccttagaacgaattaaatcaaatgaccagttctgtcttatgactat 392
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gaaatttggtcttaccttagaacgaattaaatcaaatgaccagttctgtcttatgactat 610

                                                                       
Query: 393 gttaaaaataatatcagtgtatagctcttatttaacaaatattgcgagacttattctgta 452
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gttaaaaataatatcagtgtatagctcttatttaacaaatattgcgagacttattctgta 550

                                                              
Query: 453 tgtgcagcagtttgatagacaccagggacacacagggatagttgtgagctc 503
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tgtgcagcagtttgatagacaccagggacacacagggatagttgtgagctc 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)