BAC Information

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BAC

Clone NameMSMg01-458E21
Chromosome11 (Build37)
Map Location 121,049,890 - 121,050,132
singlet/doubletsinglet
Overlap gene1110031I02Rik
Upstream geneLOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r
Downstream geneHexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750, B3gntl1, Metrnl, Ptchd3, LOC667879, LOC674842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458E21.T7 (MSMg01no458_e21.b1)MSMg01-458E21.TJ (MSMg01no458_e21.g1)
ACCAG544166AG544167
length769781
length of high quality
(start - end)
243 (340 - 582)191 (126 - 316)
definitionCHROMAT_FILE: MSMg01no458_e21.b1 PHD_FILE: MSMg01no458_e21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:51 2005CHROMAT_FILE: MSMg01no458_e21.g1 PHD_FILE: MSMg01no458_e21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGACAC
CGCGGAATTCACTTTGTATTTCCGAAAGCCCTCGAACTCATAGACGTTCA
TCTGCCTCTGCCTCTTGAGTGCTGGTACTAAAGGCATATGCCACTAGGAG
CATGTTTTTTTAAACTTTCTTAGGTCAGCAGAATTTCTAATCTAGATTTC
AGAGCAATCCCTTGTTCGTCAGTACATACATCTATACCCAAGAGACCAGT
CCCTACATAGAAGATCATATCATATGCCCATGTGCTCCAAGGAGAGTGGA
CACAAAGGTCTGGTGTGTGAGTGAAACATGGCTCAGTCTTAAGTAGAATA
GCCTCTACTGTTAACTAGAACATATTAAAAGCTGTGTATTAACCTAAGGT
GACTGCGGCCAGTGAGAAGGGTGCTGGAAGGCCTACTAGGTAGAAGATGC
TCTAGGGCCAGTAAGATGCCCCAGTGGGTAGAGGTGCTTACGTGCAAGCC
TAGTGCTTGAGCTCAATTCCCTGAGCCCATGGAAAGGTGGACAATGAGAA
TCAGTTTTACAGAGTTGTCTTCTGACCGCCACACATATGCCCATACCATA
TATACACACAAACGTGTGCGTGCACACACACATGCCCACACACCCACTTG
CAGTCACAGTAATGATACCTAATATTTTTTAAACATCATGGTAAGGAAAT
TTCCGATCCACCCCCCTAGTTTCCCTTTAAAACATGGGAAGGGAAATAAT
GAGGCACCCGTAAAGTTTG
CGATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCCGAAAATCCACCCCTTCCTATATACGATAAGGCAAT
ACATCCTCATAGAAACCTGTATCAGATAGTCCTAGCAGCTGGATGCATGA
TAAATGGACAAACATATTTATATAAAGAAGGAAACTCTGACCTGCATAAA
CCTTGAGGACATCATGCTAAGTAAAACATACCAGACACAGGTTTCTGGAG
TGTTTACTGATAGAGGTGAAAAGTTTAATGGGTCTGCTGGAGTTAGAGGA
GGGAGATTGCTCAGTTATTTTCTTGNNGTACACAAAGTTTCAGCTTGGGG
AGATGGACAAGTTCTAGACACTGGTGGTAGTAATGGTTACATAATAGCAT
GATGTGCTTAGTGTAACTAAACAGCGGTTAAAACGGGCTGGTGATGTAGC
TCAGTGATAAAGCACTCGCCTGGAATATGTGAAGTTCTGCCATAGAATCC
CCAGCACATACCAATAACGTTAACATGAACATTCTCATGCTACACATATT
TTCGCTACCACGCTAACGCTACTCCGGCTATTTATTTAGACAGGATCTCT
CTACATAGTCCCGGATGGCCCTGACCTTGTTATCCATATCAACCTTCCTT
TCCCACAGTCCTGTTTTTTTTTGCCACTTCTCCCGCACGCCCTCAATGCT
TGCCCCACCCCCCGCTAAGATAAACCCCATCCTGCCCTATATTCCTCCCC
TACGATACTCCTTCCTTATCCTTCCCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_e21.b1 MSMg01no458_e21.b1 CHROMAT_FILE:
MSMg01no458_e21.b1 PHD_FILE: MSMg01no458_e21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:51 2005
         (243 letters)



>mm_chr11_121049690_121050332
          Length = 643

 Score =  441 bits (228), Expect = e-128
 Identities = 240/244 (98%), Gaps = 2/244 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagtagaatagcctctactgttaactagaacatattaaaagctgtgtattaacctaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taagtagaatagcctctactgttaactagaacatattaaaagctgtgtattaacctaagg 260

                                                                       
Query: 61  tgactgcggccagtgagaagggtgctggaaggcctactaggtagaagatgctctagggcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgactgcggccagtgagaagggtgctggaaggcctactaggtagaagatgctctagggcc 320

                                                                       
Query: 121 agtaagatgccccagtgggtagaggtgcttacgtgcaagcctagtgcttgagctcaattc 180
           ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 321 agtaagatgccccagtgggtagaggtgcttatgtgcaagcctagtgtttgagctcaattc 380

                                                                       
Query: 181 cctgagcccatggaaaggtggaca-atgagaatcagttttacagagttgtcttctgaccg 239
           |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgagcccatggaaaggtgga-agatgagaatcagttttacagagttgtcttctgaccg 439

               
Query: 240 ccac 243
           ||||
Sbjct: 440 ccac 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)