BAC Information

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BAC

Clone NameMSMg01-458O20
Chromosome11 (Build37)
Map Location 121,829,362 - 121,829,632
singlet/doubletsinglet
Overlap genenone
Upstream geneCsnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750, B3gntl1, Metrnl, Ptchd3, LOC667879, LOC674842
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458O20.T7 (MSMg01no458_o20.b1)MSMg01-458O20.TJ (MSMg01no458_o20.g1)
ACCAG544642AG544643
length741757
length of high quality
(start - end)
271 (338 - 608)595 (74 - 668)
definitionCHROMAT_FILE: MSMg01no458_o20.b1 PHD_FILE: MSMg01no458_o20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:39 2005CHROMAT_FILE: MSMg01no458_o20.g1 PHD_FILE: MSMg01no458_o20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCTAAAATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAACA
CCGCGGAATTCATACTGGTTTACAACCTTACAAATGTAATCAGTGTGGTA
AAGACTTTGCCTATCATAGAACTTTCCAAGTACAAAAAAGAACACATACC
GGAGAGAAGCCCTATGAATGTAATAAATGTGTCAAAGCCTTTGCATATTA
AAATTATTTTCAAGTACATAAAACTATACATACTGGAGAGAAACCCTCTG
AATGCAAGCAATGTAGTAAATCCTTTGTTTCTCGTGTTTCATGTGTGAAA
CATGAAAGAATTCATACTGGAATGAAAGATTATTTATGTAGACAATGTGG
TAAAGCCTATTCATAATCAAGTCACCTCCAACTACATAAAAAAACATGTA
CTAAAGAGTAACCCTATGAATATAGCCAAAGTGGTAAAGCCTTTACAGTG
TTATTGAAAGCCCATGGCAAGTGGCTGTATTAGGAAGTATGGCCTTTCTG
GAGTAGATGTGACAGTTGAGAAAGTATGTCACTGTAGGGTTGGACTCTGA
GATCCTAATTAAGCTCCACCCAGGGCAGAAGACTCTTCTGGCTGCCTTCT
GATCAAGAGATCAAATTCTTGTCTCCTCCAGCACCATGTCTGCTTAGACA
CTGACATTTTTTTCAGCCTTGATGATAATAGAGTGAACATTTGCCTCTAT
ACACTTCTCCCAATAAATGGTCTTTGGTAAAAATGGCTTGG
AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCATCTCCCCTCCTAAAGAAGGTAGGT
GAAACTTATTTGAGATGACAAAAGGCTCTATGGCTATTTGAAGAAGATGG
TATGTTATTTAGTTGCTTTAATTAGTACCTAAAGTACAGATCATAATATT
CCCTTTTGTGTGAGAGGATAGTCATGTAAAATACATGCAATTGGAACTGT
TTTGTGCAGGAGCCAAAAACCCTAGAATTCCTGGTAACTTCCAAGATGTC
CTTGTGCTCATAGCCTCATTAATTTTTTAATATTTATGATGACCTCGGGC
CATCAAGAGGAATAATTATACTCTGTGTACTCCAATTCCTAAGGCAGGCT
CTTACATAATACATTAAAAATTACTAACACTTATTGAACTCTATGTGCCA
GGACTTGTATTCTATGTTTTACAGGGATTATCCAAATATTCCCATATAAA
ACAGCTTTAACTAAAAATATTTTGGTACTTAAGCTTTAGTTGGCTGAAAA
GTTTACATATGTGGAAAACACATTTACTAAGGAGGCTTTGATTAAATAAT
GGCTCTACATTCTCCGTTTGGACTGTGTGTGTGCATAAACATATTACGTC
TGGTAAGTGTGTTCACAGTATTTTTGTACCGTGCTCTGTTCTTCAGCAGT
ACTAGTAATCCTTTACCCATGGGAAATGCATAATGAGACTCCCAGTCTTA
CGCATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_o20.b1 MSMg01no458_o20.b1 CHROMAT_FILE:
MSMg01no458_o20.b1 PHD_FILE: MSMg01no458_o20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:39 2005
         (271 letters)



>mm_chr11_121829311_121829981
          Length = 671

 Score =  447 bits (231), Expect = e-130
 Identities = 261/271 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtagacaatgtggtaaagcctattcataatcaagtcacctccaactacataaaaaaacat 60
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 322 gtagacaatgtggtaaagcctattcataatcaagtcacttccaactacataaaagaacat 263

                                                                       
Query: 61  gtactaaagagtaaccctatgaatatagccaaagtggtaaagcctttacagtgttattga 120
           ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 262 gtactaaagagtaaccccatgaatataaccaaagtggtaaagcctttacagtgttattga 203

                                                                       
Query: 121 aagcccatggcaagtggctgtattaggaagtatggcctttctggagtagatgtgacagtt 180
           ||  |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 202 aataccatggcaagtggctgtatttggaagtatggcctttctggagtagatgtgacaatt 143

                                                                       
Query: 181 gagaaagtatgtcactgtagggttggactctgagatcctaattaagctccacccagggca 240
           |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 142 gagaaagtatgtcactgtggggttggactctgagatcctaattaaactccacccagggca 83

                                          
Query: 241 gaagactcttctggctgccttctgatcaaga 271
           |||||||||||||||||||||||||||||||
Sbjct: 82  gaagactcttctggctgccttctgatcaaga 52


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space:   173444
Effective search space used:   173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)