BAC Information

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BAC

Clone NameMSMg01-458P10
Chromosome11 (Build37)
Map Location 89,470,006 - 89,470,250
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038945, Akap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1
Downstream genePctp, Tmem100, LOC100039104, Mmd, Hlf, Stxbp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458P10.T7 (MSMg01no458_p10.b1)MSMg01-458P10.TJ (MSMg01no458_p10.g1)
ACCAG544670AG544671
length760763
length of high quality
(start - end)
245 (82 - 326)39 (72 - 110)
definitionCHROMAT_FILE: MSMg01no458_p10.b1 PHD_FILE: MSMg01no458_p10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:42 2005CHROMAT_FILE: MSMg01no458_p10.g1 PHD_FILE: MSMg01no458_p10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCGTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGG
AGCCGCGGAATTCCATGGGTTCATCTTAGACGGCTGTTCACCTTGAAAGG
TTATGAATTTGTAACACATAGGATACAAATGTTCCCTCTGGGGCTCTAAC
TGTTTTAGGATCCCTGGTAAAGAGAAATGGGTTTCTCTGGAGGTGGGGCG
GGTTAGGGGATGTAGCAACTCCCAAGGCATTATAGAGACAATGTAGCCCA
AGAGAACGCATGAGTGTTTCAATTCATGCTCACATGCTGTTGGCAGAATG
TATTCTAGGTGGTTCTGTTATATGGTTTTTTTTCTTTATACTCAAAACAA
GGCAATTGCTTCCTATACCTGCTTGTGGTATACAGACAAGCTATCTCAAA
AGCTGATATCTGCATGGAAAGGCAAACAGTAGACCTTTGAGGGGGGACAC
GGGAAACCCCTGGTTTCTAGTTTGCACTCTGTGCAGGGGTTACTGCTTGC
TCCACTCAAGTGCCAAGTAGAGCAATTGGAAAACAAACAGAAGATAGAGG
GAGTCTAGGTTAGGCAACAGATATCATCCTTTGTATGTTGATCAAGGAAA
CGATATGCTCAATTAGCTTGTTCATTCATGAAGGGTTCTTCTTTTGGTAT
AATTACTAGAATGACTTTTTTTTTTTTTTTTAGCCCAAATTATTTCTTGG
AAGAGGGCGTAATAAATAATAAGCCCTGTTTTATACTTCTAGCCTTTTTT
CTTTATCTTN
CCCATGATGTGGGAGGCCTGGGGGCGCCTGCTTCCAAATTTGGGNGAACN
ANAGAAGTTTCGATAACATCCTAGAGAGATGATAGGAGGGGCAGCTTTTG
CGACAGGCACTGACAGCTGGTTCGGATTCCAAAGGGCTGCGCCACTCCTC
TAGCATGANGAAACAGGAGAAATTTCAACTATGGCATGATATCATCCATG
CTTTTAGTCGCATTTGTCCCTTAAACCATAGCTTTTAATTGCTGTTCCCA
TCATATCCCTATTTCTTTCTTTCACCAGGAAAAAAAATGGAATCTTTTGA
AATTCCCACGAAAAGCACATTTTTTTTTTGTATTTACTGNTCCCAGCTTT
CAAGACAAAAACCATCCTTTAATAATGTAAAACAAATCTTGTTATTTGGC
AAAGCAAACTCAAGTGGTTTCTTGCAGAATCAAGAAAGGGGAACCAGCAG
CATTAGAATAGAGCCAGGCAGCTACACAGGCTGTGTACAAACAAGTCAAG
AATCCACCACAATTTTTACAGCTCCTTGTCATGTGCTGATCCGTGTCCCA
ACAGCCTTATCAGGTAGTCAGATGAATTGCTGGTGGATCTCACCTCTGCA
GAGGAACTTCTCCAGAGCGAAAAGGGATTGTAAAGGCTGGAGCGGTATCT
CACTTGCAAAGAGATAGCTTATTATTTTGGTAGGCCCCTCGGCTCCATCC
ATTCTATCAAAAAAGTAGTCACACGGATCGACCCATTTCCAGCCCATAAT
TATTGTATATTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_p10.b1 MSMg01no458_p10.b1 CHROMAT_FILE:
MSMg01no458_p10.b1 PHD_FILE: MSMg01no458_p10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:42 2005
         (245 letters)



>mm_chr11_89469806_89470450
          Length = 645

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggctgttcaccttgaaaggttatgaatttgtaacacataggatacaaatgttccctctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggctgttcaccttgaaaggttatgaatttgtaacacataggatacaaatgttccctctgg 260

                                                                       
Query: 61  ggctctaactgttttaggatccctggtaaagagaaatgggtttctctggaggtggggcgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggctctaactgttttaggatccctggtaaagagaaatgggtttctctggaggtggggcgg 320

                                                                       
Query: 121 gttaggggatgtagcaactcccaaggcattatagagacaatgtagcccaagagaacgcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 gttaggggatgtagcaactcccaaggcattatagagacaatgtagcccaagagaacgcaa 380

                                                                       
Query: 181 gagtgtttcaattcatgctcacatgctgttggcagaatgtattctaggtggttctgttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagtgtttcaattcatgctcacatgctgttggcagaatgtattctaggtggttctgttat 440

                
Query: 241 atggt 245
           |||||
Sbjct: 441 atggt 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)