BAC Information

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BAC

Clone NameMSMg01-460C16
Chromosome11 (Build37)
Map Location 112,794,983 - 112,975,494
singlet/doubletdoublet
Overlap gene2610035D17Rik
Upstream geneLOC100041589, LOC100043020, EG668396, EG667038, LOC100041610, LOC671963, LOC667047, BC006965, Sox9
Downstream geneSlc39a11, Sstr2, Cog1, D11Wsu99e, D11Wsu47e, D11Ertd636e, Cdc42ep4, Sdk2, LOC100041739
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460C16.T7 (MSMg01no460_c16.b1)MSMg01-460C16.TJ (MSMg01no460_c16.g1)
ACCAG545588AG545589
length710710
length of high quality
(start - end)
477 (66 - 542)507 (69 - 575)
definitionCHROMAT_FILE: MSMg01no460_c16.b1 PHD_FILE: MSMg01no460_c16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:20 2005CHROMAT_FILE: MSMg01no460_c16.g1 PHD_FILE: MSMg01no460_c16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,975,018 - 112,975,494)(112,794,983 - 112,795,489)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATTC
TACACTTGCCGAATGGGGACGGTAAGCAGGGGCTTTCTATGTATTGTGGC
ATGTTTGTCAGCATTCCTGACTTTTATTAGATGCCACAAGTGACCGTCCC
CCGGCCCTTGCAACGTTCTGTGTGCACGCCCCCAAATGGTCGTGACACCA
AATGACCCCCAGAGACTTTAATTAAAGAGAGGGTGCCTCGTGGAGGCTTC
GAGCCGCCCCTGCGGGGAATCCCTTCAGACCATAATACTGACCAATAATT
TACTTTATTTTTACTCAGAAACTGGTGCAGGGACTGCGGAGAAGGCTCAG
TGTCTAAAATGCTTGCCGCATAAGCATGAAGTCCTGGGTTTGGGTTTCCA
GCACCCACGTAAAGAGCGAGCACTAAACGGTGAGATCAGTGCTCCAGGTG
TGCTGATAGGCAGATGCCCAGGACTGTTTGGCCAGCCAATCAGCCAGTCC
TCTGAAGTCTGAGTTTGGTGAGAAACCCTTTCTTAAAAATAAGATGGAGA
CCTATAGGAAGACTCCAAAAATCACAGACTGCCCCCCCCTTTCCTGCACA
TGCGCCCCACTCCTACTGTCTCATAAGCATATAATGTGTATTGTTTTTTT
GATAAAGACTGTCCTTTCCCAGTCTTCCATATTGCTCTCTTCTGAGATTG
CCTTAATTGA
CTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTGGAGAGCCAATTTCAGCCTCAAACTCATG
GCAATCCTTCTGTCTCTGTATCCCTAGGGCTAGAGTATCAGACATGAGCC
CCCACAATCCCTTTCCACTGCAAGTCCAAGGTGGTCTCTAACAGACTTAA
AGAGACACAGAAAGAAGTCAGCAGTCACATACCACATTTCTCTTTGTGTG
TTGTTCACACTGCTAACAAGTCCTTTTTGTGGGTCAGGGGTCAACAAACT
TTGATGTCTAGAGCCGGTAAGTAAATATCTTAGGCTTTCAAGCCACATCA
CTCAGCTCAACTGCTGTAGGTCAGAGCAGCCATGTTCACGTCAATGAGCA
GGTGTGGCTATGTCCCAGGAAGGATTTTCATGGACAGAGAGACCTGCACC
TGCCACACAACACAAGCACTCAACACTGAGCTACAGCCACAGCATCTCCT
AATAAAGTTTTATTTACAAAAGCAGACAGTAGTTTGTAAAACCCCCTGTT
CTGAGATGCAGCTTCCTCAAAGTCAAGACCTGTGTCTTACTAATGCTTGT
ATCTCCAGCTTCCAATTAAGACCTTGGTGCATCATAGATGTTACTTAAAT
GATTAATAGACGAATGCGAGTCAAGTCCCAATTTCAGGGAACTAGTCCTA
TACAATATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_c16.b1 MSMg01no460_c16.b1 CHROMAT_FILE:
MSMg01no460_c16.b1 PHD_FILE: MSMg01no460_c16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:20 2005
         (477 letters)



>mm_chr11_112974944_112975820
          Length = 877

 Score =  891 bits (461), Expect = 0.0
 Identities = 473/477 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggacggtaagcaggggctttctatgtattgtggcatgtttgtcagcattcctgactttt 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 551 gggacggtaagcaggggctttctatgtattgtgtcatgtttgtcagcattcctgactttt 492

                                                                       
Query: 61  attagatgccacaagtgaccgtcccccggcccttgcaacgttctgtgtgcacgcccccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 attagatgccacaagtgaccgtcccccggcccttgcaacgttctgtgtgcacgcccccaa 432

                                                                       
Query: 121 atggtcgtgacaccaaatgacccccagagactttaattaaagagagggtgcctcgtggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 atggtcgtgacaccaaatgacccccagagactttaattaaagagagggtgcctcgtggag 372

                                                                       
Query: 181 gcttcgagccgcccctgcggggaatcccttcagaccataatactgaccaataatttactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gcttcgagccgcccctgcggggaatcccttcagaccataatactgaccaataatttactt 312

                                                                       
Query: 241 tatttttactcagaaactggtgcagggactgcggagaaggctcagtgtctaaaatgcttg 300
           ||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tattgggactcagaaactggtgcagggactgcggagaaggctcagtgtctaaaatgcttg 252

                                                                       
Query: 301 ccgcataagcatgaagtcctgggtttgggtttccagcacccacgtaaagagcgagcacta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ccgcataagcatgaagtcctgggtttgggtttccagcacccacgtaaagagcgagcacta 192

                                                                       
Query: 361 aacggtgagatcagtgctccaggtgtgctgataggcagatgcccaggactgtttggccag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 aacggtgagatcagtgctccaggtgtgctgataggcagatgcccaggactgtttggccag 132

                                                                    
Query: 421 ccaatcagccagtcctctgaagtctgagtttggtgagaaaccctttcttaaaaataa 477
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ccaatcagccagtcctctgaagtctgagtttggtgagaaaccctttcttaaaaataa 75


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no460_c16.g1 MSMg01no460_c16.g1 CHROMAT_FILE:
MSMg01no460_c16.g1 PHD_FILE: MSMg01no460_c16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:20 2005
         (507 letters)



>mm_chr11_112794783_112795689
          Length = 907

 Score =  957 bits (495), Expect = 0.0
 Identities = 504/507 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actggagagccaatttcagcctcaaactcatggcaatccttctgtctctgtatccctagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actggagagccaatttcagcctcaaactcatggcaatccttctgtctctgtatccctagg 260

                                                                       
Query: 61  gctagagtatcagacatgagcccccacaatccctttccactgcaagtccaaggtggtctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctagagtatcagacatgagcccccacaatccctttccactgcaagtccaaggtggtctc 320

                                                                       
Query: 121 taacagacttaaagagacacagaaagaagtcagcagtcacataccacatttctctttgtg 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 taacagacttaaagagacacagaaagaagtcagcagccacataccacatttctctttgtg 380

                                                                       
Query: 181 tgttgttcacactgctaacaagtcctttttgtgggtcaggggtcaacaaactttgatgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgttgttcacactgctaacaagtcctttttgtgggtcaggggtcaacaaactttgatgtc 440

                                                                       
Query: 241 tagagccggtaagtaaatatcttaggctttcaagccacatcactcagctcaactgctgta 300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagagccggtaagtaaatatcttaggctttcaagccacatcactcagctcaactgctgta 500

                                                                       
Query: 301 ggtcagagcagccatgttcacgtcaatgagcaggtgtggctatgtcccaggaaggatttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtcagagcagccatgttcacgtcaatgagcaggtgtggctatgtcccaggaaggatttt 560

                                                                       
Query: 361 catggacagagagacctgcacctgccacacaacacaagcactcaacactgagctacagcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catggacagagagacctgcacctgccacacaacacaagcactcaacactgagctacagcc 620

                                                                       
Query: 421 acagcatctcctaataaagttttatttacaaaagcagacagtagtttgtaaaaccccctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 621 acagcatctcctaataaagttttatttacaaaagcagacagtagtttgtaagaccccctg 680

                                      
Query: 481 ttctgagatgcagcttcctcaaagtca 507
           |||||||||||||||||||||||||||
Sbjct: 681 ttctgagatgcagcttcctcaaagtca 707


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)