BAC Information

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BAC

Clone NameMSMg01-460N02
Chromosome11 (Build37)
Map Location 81,039,619 - 81,040,057
singlet/doubletsinglet
Overlap geneAccn1
Upstream geneRhot1, Rhbdl3, 5730455P16Rik, Zfp207, LOC100043601, LOC100042726, Psmd11, Cdk5r1, Myo1d, Tmem98, Spaca3
Downstream gene1700071K01Rik, 5530401A14Rik, Ccl2, Ccl7, Ccl11, Ccl12, Ccl8, Ccl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460N02.T7 (MSMg01no460_n02.b1)MSMg01-460N02.TJ (MSMg01no460_n02.g1)
ACCAG546085AG546086
length723740
length of high quality
(start - end)
533 (59 - 591)439 (67 - 505)
definitionCHROMAT_FILE: MSMg01no460_n02.b1 PHD_FILE: MSMg01no460_n02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:11 2005CHROMAT_FILE: MSMg01no460_n02.g1 PHD_FILE: MSMg01no460_n02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAAA
TATGCTCAATGTTTTGTAAATGGATTTTTTGGGTTCTTTGTGATGTTAAA
CATACATACTCCAAACTCAAGACTCAGAAAGTCTGTCATGGATATTTACG
CATGAGCTCTAGAGAGATGAACTACATCTCCTGTGGAAACCTGTACACAA
GTGTTTGCAGCCTCTGTCTCTAATGGCCACGACCTAGAAACACTACAATG
GTCTCTATTACAGTATGGGAGGGCACACCAAGTTGGTACAGTCACAAAGG
GTGACAGTTGGCAATGGGTAAAGCATTGACAAATGACACAGGTGAGGGTG
CAAATGAGCCTTGGGCATTCTGGTAAGTGAAACGAGTCAGAAACTAAAGA
TGACAAGACACCATCCATACAGCATTCTCTAAGACAGTGGCTCTCAACCT
GTGGGTCGTGACCTCCTCAGGGGTCACATATCAGATAGCCTGCATATCAG
ATATTTATCTAACGATTTATAACGGTAGCAAAATTACAGTTAGGAAGCTA
GCAACAAAATAATTTTATGGCTGGGAGTCACCATGAGCAACTGTATCAAG
GGTTGCAGCATTAGGAATGATGAGAACCACTGCTCTAAGAAGTGAAGCTA
CAAGAGCAGAACCCCCCAAGGTTTGGGGTTGCAGCTGGCAGAAAACACTG
GTCACGTGGTTTTGAGACGTGTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTGTGCTTTATTTGCAAAGCTCACTCTGGGGAC
TTTCCACTGAAGGGACCACCTTGGTCTCAGCTTTGTCCCAACTCAAGTGA
AGATGTGGTGACCTTCTCTATTTTCAGATCGCAGTAGAGGGGTCTCATCG
CTTTGGCTCTGTGATCTGAATCTCTGCCTCAGGAGGAAACCCAGGGCGCT
TTAAAGATCTCCATCACTTGGGCTTAAGAGGGGCAGTTTTTGTTTTCTAT
TAGCCAACAGTGATTGCAGAAATTGGGGAAATGCAGAAGAAATGAGTACA
CAAAGGGGTTGCAGCCTTGGATGGAGGATAAGTGGAAGGTTCAAGAGCAA
TAGGGACACATCATAGTATCATTCAGATGAAGAGTGCTTTTGTGGGACCT
GGGTTGAGACAAATAGGTAGGTCAAATGGAAAGTGGTGGTGAGGAGAGAG
AGAGGCTCAGGTAAGACTGACTGGCTGGGCTTTAGGTTTGGGGTATAATA
CACCATTTTATTCTATGTACCTGCTGTCTTCGTTTCTCCCTATTTGTATC
GCCCGAGTTTTCGAAATTTATAATGGACCACTCATTTGGCCTCCCTTATG
CGTTCGAAATCTTTTTTTTTCTTTCTCATGACCCCTTTTTTTTTTTTCGA
CCCTTTGCAACCAATGTTCCCTATCCCTATTATCATTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_n02.g1 MSMg01no460_n02.g1 CHROMAT_FILE:
MSMg01no460_n02.g1 PHD_FILE: MSMg01no460_n02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:11 2005
         (439 letters)



>mm_chr11_81039419_81040257
          Length = 839

 Score =  841 bits (435), Expect = 0.0
 Identities = 438/439 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgtgctttatttgcaaagctcactctggggactttccactgaagggaccaccttggtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgtgctttatttgcaaagctcactctggggactttccactgaagggaccaccttggtc 260

                                                                       
Query: 61  tcagctttgtcccaactcaagtgaagatgtggtgaccttctctattttcagatcgcagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagctttgtcccaactcaagtgaagatgtggtgaccttctctattttcagatcgcagta 320

                                                                       
Query: 121 gaggggtctcatcgctttggctctgtgatctgaatctctgcctcaggaggaaacccaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggggtctcatcgctttggctctgtgatctgaatctctgcctcaggaggaaacccaggg 380

                                                                       
Query: 181 cgctttaaagatctccatcacttgggcttaagaggggcagtttttgttttctattagcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgctttaaagatctccatcacttgggcttaagaggggcagtttttgttttctattagcca 440

                                                                       
Query: 241 acagtgattgcagaaattggggaaatgcagaagaaatgagtacacaaaggggttgcagcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagtgattgcagaaattggggaaatgcagaagaaatgagtacacaaaggggttgcagcc 500

                                                                       
Query: 301 ttggatggaggataagtggaaggttcaagagcaatagggacacatcatagtatcattcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttggatggaggataagtggaaggttcaagagcaatagggacacatcatagtatcattcag 560

                                                                       
Query: 361 atgaagagtgcttttgtgggacctgggttgagacaaataggtaggtcaaatggaaagtgg 420
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ataaagagtgcttttgtgggacctgggttgagacaaataggtaggtcaaatggaaagtgg 620

                              
Query: 421 tggtgaggagagagagagg 439
           |||||||||||||||||||
Sbjct: 621 tggtgaggagagagagagg 639


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)