BAC Information

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BAC

Clone NameMSMg01-461F09
Chromosome11 (Build37)
Map Location 116,596,187 - 116,658,869
singlet/doubletdoublet
Overlap geneLOC634720, BC018473, St6galnac1
Upstream geneLOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2
Downstream geneMxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b, LOC100042036, Sec14l1, Sept9, EG667423, Tnrc6c, Tmc6, Tmc8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461F09.T7 (MSMg01no461_f09.b1)MSMg01-461F09.TJ (MSMg01no461_f09.g1)
ACCAG546483AG546484
length756734
length of high quality
(start - end)		424 (75 - 498)515 (78 - 592)
definitionCHROMAT_FILE: MSMg01no461_f09.b1 PHD_FILE: MSMg01no461_f09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:54 2005CHROMAT_FILE: MSMg01no461_f09.g1 PHD_FILE: MSMg01no461_f09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,658,446 - 116,658,869)(116,596,187 - 116,596,701)
sequence
NCCCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTCTGTTTCCAGGATTTTGAAAAGTCTTTTTCTCACTCC
TTTTATGCTCTTTCATCCCTTTGTGCCAAGCTCTCCAAAAAACCCCAAAA
AACAAACAAACAAACAAAACCGGGTAGCTGTGTACAACAGGCTGTCAGAC
ATCTAGCCGGTTTAATAACTGATCATACTCACTTGCCAGACGGTGGCTGG
CTCCCTCACACTGACTTCAGGAGAGGAAGCGGCTGACAAAATTAAGAAAA
TTGTTCTAGGAAGAAAAGAAGTGATGAGAGAAGCAGACTGGGCACGGAGG
ATTCAACTTTGAATACTCGAAATCTCACTCTCAGACGTTGATTGCTACTG
TCTGCATGCACACTGAGCCAGGCAAAGTAACACTGAACCACTAGACTGCG
TTCCGACCTTCTGGGCAAGGTGAATCAAGAGTTCGATAAGTGTGAGAGTC
CAGACAAGTGTCCTCAGAGGCCAGAGGAGAAGTTACAGGCTACCTGAGTT
ACCCTGGGGTGCTTGGAACGGACCTCGGTCTGAGCAGTCAGTTCTCTTAA
ATGCTGAACCATTTCTCTAGCCCCAAGAAAAAAAAACGCGCGAAGAAATT
GGTTTTTCTCCCCCTTCTGGTCCGCAATACTTTTTGGCACACTTTTAAAA
AAACAAAGGTATTCCCCCCCACGGAGGTTTTCCTTTCCAATACACTTTCT
CTTTCA

NACGATGCAGTGNNGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACAGAGATCTGCCCACCTCTGCC
TCCTGAGTGCTGGGATTAAAGGCGTTCGCCACCACTGCTGACTAAGGGTC
TCCTTTTCTCTTCCTACTCAGCCCAGTTTTCCCTTCCTTTTCTTCCTGCT
TCAAAGTGACAGATTTAAACAGAGTCATATGTAGGTAAATTCATATACAC
ACATGAATATTTGCACATATAAATATATATGCACAGGAATGTACACACAT
AAATATACACACATGAACATACTCAGGAACATATACATGAACATATACAC
ATGAATATACACAGGCATAGATGCACTCATGAACACATACATGGATACAC
ACATGAATACACATGTATATAATACACATATATGAACACACATTCACAAG
TACACACATGAATGCACATACACACATGAGCACACATGCATGAATACACA
CATATGAACACCCACACACATGTATATATGTGTGTATACACACATGAACG
CACACACATGGATACATACATGAGCACGCATGTATGAATACACACATATG
AACACCCACACACATGTATATATGTGTGTATACACACATGAATGCCCCCC
CTGTATATACATACCAATATACACTTATAATTCTATCTGTCCTCCATCTA
AACCAATCCTTCTTGTTAAAATCCCCACTCATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_f09.b1 MSMg01no461_f09.b1 CHROMAT_FILE:
MSMg01no461_f09.b1 PHD_FILE: MSMg01no461_f09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:54 2005
         (424 letters)



>mm_chr11_116658246_116659069
          Length = 824

 Score =  797 bits (412), Expect = 0.0
 Identities = 421/424 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attttgaaaagtctttttctcactccttttatgctctttcatccctttgtgccaagctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 attttgaaaagtctttttctcactccttttatgctctttcatccctttgtgccaagctct 565

                                                                       
Query: 61  ccaaaaaaccccaaaaaacaaacaaacaaacaaaaccgggtagctgtgtacaacaggctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ccaaaaaaccccaaaaaacaaacaaacaaacaaaaccgggtagctgtgtacaacaggctg 505

                                                                       
Query: 121 tcagacatctagccggtttaataactgatcatactcacttgccagacggtggctggctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcagacatctagccggtttaataactgatcatactcacttgccagacggtggctggctcc 445

                                                                       
Query: 181 ctcacactgacttcaggagaggaagcggctgacaaaattaagaaaattgttctaggaaga 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 444 ctcacactgacttcaggagaggaagctgctgacaaaattaagaaaattgttctaggaaga 385

                                                                       
Query: 241 aaagaagtgatgagagaagcagactgggcacggaggattcaactttgaatactcgaaatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaagaagtgatgagagaagcagactgggcacggaggattcaactttgaatactcgaaatc 325

                                                                       
Query: 301 tcactctcagacgttgattgctactgtctgcatgcacactgagccaggcaaagtaacact 360
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcactttcagacgttgattgctactgtctgcatgcacactgagccaggcaaagtaacact 265

                                                                       
Query: 361 gaaccactagactgcgttccgaccttctgggcaaggtgaatcaagagttcgataagtgtg 420
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaaccactagactgcgttctgaccttctgggcaaggtgaatcaagagttcgataagtgtg 205

               
Query: 421 agag 424
           ||||
Sbjct: 204 agag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no461_f09.g1 MSMg01no461_f09.g1 CHROMAT_FILE:
MSMg01no461_f09.g1 PHD_FILE: MSMg01no461_f09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:54 2005
         (515 letters)



>mm_chr11_116595987_116596901
          Length = 915

 Score =  965 bits (499), Expect = 0.0
 Identities = 511/515 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagagatctgcccacctctgcctcctgagtgctgggattaaaggcgttcgccaccactg 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 acagagatctgcccacctctgcctcctgagtgctggggttaaaggcgttcgccaccactg 260

                                                                       
Query: 61  ctgactaagggtctccttttctcttcctactcagcccagttttcccttccttttcttcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgactaagggtctccttttctcttcctactcagcccagttttcccttccttttcttcct 320

                                                                       
Query: 121 gcttcaaagtgacagatttaaacagagtcatatgtaggtaaattcatatacacacatgaa 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttcaaggtgacagatttaaacagagtcatatgtaggtaaattcatatacacacatgaa 380

                                                                       
Query: 181 tatttgcacatataaatatatatgcacaggaatgtacacacataaatatacacacatgaa 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatttgcacatataaatatatatacacaggaatgtacacacataaatatacacacatgaa 440

                                                                       
Query: 241 catactcaggaacatatacatgaacatatacacatgaatatacacaggcatagatgcact 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catacacaggaacatatacatgaacatatacacatgaatatacacaggcatagatgcact 500

                                                                       
Query: 301 catgaacacatacatggatacacacatgaatacacatgtatataatacacatatatgaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catgaacacatacatggatacacacatgaatacacatgtatataatacacatatatgaac 560

                                                                       
Query: 361 acacattcacaagtacacacatgaatgcacatacacacatgagcacacatgcatgaatac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acacattcacaagtacacacatgaatgcacatacacacatgagcacacatgcatgaatac 620

                                                                       
Query: 421 acacatatgaacacccacacacatgtatatatgtgtgtatacacacatgaacgcacacac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acacatatgaacacccacacacatgtatatatgtgtgtatacacacatgaacgcacacac 680

                                              
Query: 481 atggatacatacatgagcacgcatgtatgaataca 515
           |||||||||||||||||||||||||||||||||||
Sbjct: 681 atggatacatacatgagcacgcatgtatgaataca 715


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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