Query= MSMg01no461_i08.b1 MSMg01no461_i08.b1 CHROMAT_FILE:
MSMg01no461_i08.b1 PHD_FILE: MSMg01no461_i08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:09 2005
(275 letters)
>mm_chr11_104627008_104627684
Length = 677
Score = 462 bits (239), Expect = e-135
Identities = 263/271 (97%), Gaps = 2/271 (0%)
Strand = Plus / Plus
Query: 4 gaattcttagggtttac-cgctgttgaaggacgagatgtgtgtgacttctagaatcacca 62
|||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcttagggttaacaagctattgaaggacgagatgtgtgtgacttctagaatcacca 263
Query: 63 gagggtgtcactacaatcgtcttgttttctttgcaaggataattgatgtggaaggcttgc 122
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 264 gaaggtgtcactacaatcgtcttgttttctttgcaaggataattgatgtggacggcttgc 323
Query: 123 agtttatattaagggcaggggcagagaggggtgtactcagaaacatcgtccctccattct 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agtttatattaagggcaggggcagagaggggtgtactcagaaacatcgtccctccattct 383
Query: 183 ttagttcctttgtaaccaaatgaatctgcctttaatactcgctccactgagaagctttga 242
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 384 ttagttcctttgtaaccaaatgaatctgcctttaatacttgctccactgagaagctttga 443
Query: 243 caagatatttgaacccatgagttac-attat 272
||||||||||||||||||||||||| |||||
Sbjct: 444 caagatatttgaacccatgagttacgattat 474
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 677
Length adjustment: 9
Effective length of query: 266
Effective length of database: 668
Effective search space: 177688
Effective search space used: 177688
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no461_i08.g1 MSMg01no461_i08.g1 CHROMAT_FILE:
MSMg01no461_i08.g1 PHD_FILE: MSMg01no461_i08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:09 2005
(409 letters)
>mm_chr11_104776292_104777101
Length = 810
Score = 762 bits (394), Expect = 0.0
Identities = 406/412 (98%), Gaps = 6/412 (1%)
Strand = Plus / Minus
Query: 1 atcacattgctgaatatggggacgtggatcacatggtcactcaaaagcagcagaaaagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 atcacattgctgaatatggggacgtggatcacatggtcactcaaaagcagcagaaaagga 699
Query: 61 ctttgagaaaacctgacattttttcatgaaaaaaaaaaacatgaatatacaagggataga 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 698 ctttgagaaaacctgacattttttcatg-aaaaaaaaaacatgaatatacaagggataga 640
Query: 121 gggaacagatctcaacagaatgaaatataattaattcttccctggttctgttgaattttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 gggaacagatctcaacagaatgaaatataattaattcttccctggttctgttgaattttc 580
Query: 181 atagtttccaggaacagctaagtcctgtacatataacagataattggggaccatcctttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 atagtttccaggaacagctaagtcctgtacatataacagataattggggaccatcctttg 520
Query: 241 aactt---attaaatattgggatgttacatagtcagggcttacctttaattataaggttg 297
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 aacttaaaa--aaatattgggatgttacatagtcagggcttacctttaattataaggttg 462
Query: 298 tctgttagagttttacgctctttctctgtgagttcaagtcccatgtttctaagaactttg 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tctgttagagttttacgctctttctctgtgagttcaagtcccatgtttctaagaactttg 402
Query: 358 tccaggtcactgagattaaccatccctccttaaaaaaagaaaaggagacagt 409
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tccaggtcactgagattaaccatccctccttaaaaaaagaaaaggagacagt 350
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 810
Length adjustment: 9
Effective length of query: 400
Effective length of database: 801
Effective search space: 320400
Effective search space used: 320400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
