BAC Information

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BAC

Clone NameMSMg01-461I19
Chromosome11 (Build37)
Map Location 61,632,685 - 61,632,966
singlet/doubletsinglet
Overlap geneUlk2
Upstream geneLOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2
Downstream geneAkap10, D630015H07, LOC626325, LOC100041558, Specc1, Adora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461I19.T7 (MSMg01no461_i19.b1)MSMg01-461I19.TJ (MSMg01no461_i19.g1)
ACCAG546646AG546647
length734740
length of high quality
(start - end)
240 (75 - 314)282 (77 - 358)
definitionCHROMAT_FILE: MSMg01no461_i19.b1 PHD_FILE: MSMg01no461_i19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:11 2005CHROMAT_FILE: MSMg01no461_i19.g1 PHD_FILE: MSMg01no461_i19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXTATTCAAGAGAATCCGCGGA
ATTCCAGGAATTTCCGAACTACACAGAGAGATCCTGTCTCAAAAAAATTA
ACAAACGGGGCTGGATACATGCCTCAGTGGTTAAGAGTACTGACTGTTCT
TCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACGTGGTTGCTCATGGTA
ATGGGATTTGACGCGCTCTTCTGGTGGGTCTGAAGAGAGCAACAGTGTTC
TCACATATATAAAATAAACAAATCTTTAAAGTAAATAAATAGAGAAGGCT
CTTACTGACTAGTGTTGTGCTTAAGAACTTTCTTTAGGCTTTTTAAATTT
TTCTACAGTACAGTAAATATTTGACAATTTTGTGGAGTAACGTTTATTTA
CATAATTTTTATCTATAGAACATAAATGCCCCAGTGTGGTTTATTTTGAG
ACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTACAC
CAGGCTGGCCTCAAACTCACAGATATGCACCTGCCTCTGTCTCCTGAGTG
AGTGTTGAGATTATTGTGTGCACTAGCATGCCCAATGACTACTTTAAACA
CAGTAAATTTACTATTGGCGCATATTGCTTCCCCTGCTATTGATTTCCTC
AAGAAAGGTCGTATTTTTGTGCCTTTTTTTAATTTCTTGTCGCTTTTTCA
CTCTTGCTTATTTAATTTTTTTTCCCCTTTCCAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAAACAACTAAATAAAGGTTCCCT
GCACAACCAGTTGTAACATTGAAGTTTAAATTTAGTAAATTAAAAACTAT
AATGTGTACAAGTAGAAAAGATTCTCACATGAGTGGTCTGACGAGATGTT
GTGTGGAACCAAAACAAAGTCATCCGTGTCACAAGAAGAGTTCTTGCTAC
TATTACTCGCAGAGTCTTTGGACACCTGTAGATAGTTGGGAGGACCCAAC
GGTGGGGAGGATAAGTTTTTTTTCTGAATATGCTGCATATCTGGAAGGGA
CTAAAATTATCTTCATAAAATTAAAAATGTCCTAATAATCAAATACAAGT
CAGAATAGTCTAAAGAATATTCCTTTTATAAAAATGGTAATAAACGCCCA
TCTAAGGCTTTACACACACTTAAAATCTTTTCTGAAGATTTTTCTTTTAC
AAAAGTCGTCTATGATGTTTATTGAAAAACTTCTTGACCTCTACTTTAAT
GATTCTTTATAATCATATCATTTATTCCCACGTTTTTATCCCCCCCATCT
GAATCCTTTGAAAAAACCTAACCTTTTTCTATCTTCCTTTTTTCCGCTTC
CTTTTTTTTTCCTCTTTCTCTTCTCTTTTCCTCTCCCTTTGCTCCCCCCC
CCTTTCTTTTTTCCTTCCTCCTTTTTCCTCTCTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_i19.g1 MSMg01no461_i19.g1 CHROMAT_FILE:
MSMg01no461_i19.g1 PHD_FILE: MSMg01no461_i19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:11 2005
         (282 letters)



>mm_chr11_61632485_61633166
          Length = 682

 Score =  530 bits (274), Expect = e-155
 Identities = 280/282 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaacaactaaataaaggttccctgcacaaccagttgtaacattgaagtttaaatttagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaacaactaaataaaggttccctgcacaaccagttgtaacattgaagtttaaatttagt 260

                                                                       
Query: 61  aaattaaaaactataatgtgtacaagtagaaaagattctcacatgagtggtctgacgaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaattaaaaactataatgtgtacaagtagaaaagattctcacatgagtggtctgacgaga 320

                                                                       
Query: 121 tgttgtgtggaaccaaaacaaagtcatccgtgtcacaagaagagttcttgctactattac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttgtgtggaaccaaaacaaagtcatccgtgtcacaagaagagttcttgctactattac 380

                                                                       
Query: 181 tcgcagagtctttggacacctgtagatagttgggaggacccaacggtggggaggataagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcgcagagtctttggacacctgtagatagttgggaggacccaacggtggggaggataagt 440

                                                     
Query: 241 tttttttctgaatatgctgcatatctggaagggactaaaatt 282
           ||| || |||||||||||||||||||||||||||||||||||
Sbjct: 441 tttcttcctgaatatgctgcatatctggaagggactaaaatt 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)