BAC Information

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BAC

Clone NameMSMg01-461L10
Chromosome11 (Build37)
Map Location 87,040,173 - 87,040,579
singlet/doubletsinglet
Overlap genePpm1e
Upstream geneInts2, Thrap1, 0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49, Ptrh2, Cltc, Dhx40, Ypel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37
Downstream geneRad51c, Tex14, Sept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1, Mrps23
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461L10.T7 (MSMg01no461_l10.b1)MSMg01-461L10.TJ (MSMg01no461_l10.g1)
ACCAG546772AG546773
length766757
length of high quality
(start - end)
441 (48 - 488)243 (75 - 317)
definitionCHROMAT_FILE: MSMg01no461_l10.b1 PHD_FILE: MSMg01no461_l10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:25 2005CHROMAT_FILE: MSMg01no461_l10.g1 PHD_FILE: MSMg01no461_l10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCTCTGTTCTCAAGTGAGTGACGTTATGATTTACAAACCCACT
CTACAGATCACTTTTGAGTTGAGTTGTAATCATAAGTGATCCTTATTTTT
ATTTATTAAAACTGTTTATTCAGGTAAGGAGTATGTTGAAATTTTGCCAA
TATCTTAATAAAACTCAGCAATTAAAAACCACTGGTTATTTGTCTTATTC
TTAGAGGAAAGCTGAGTCAGTTGTAAATTAGGCAGGTCTTTCAGTCAAAC
ACGCCCCCTCCACCAGCCTGTCTCTAGAGTGTTGGGATTAAGGGCATATG
CCACCACTGCAAAGGGTAGATTTCTTATACCTTATGAACACTGAAAACTG
CAAATCTTCTAAGTGCTGCTTTAACTATTATCATCCACCCCCCAAAAAAA
CCCAAAAAACAAAAAACAAAACCCCAAGCACACAAAAACCCAGCCCTCAC
ACACGGGGCTTGGTGTGGGGTGGGGAAAGAGGTAAAAGTCTGGTGTTCTC
TGGTGTTTCCCCCCCCCCTCTGGTTCAACCTTGTTTATGTATAGGTTTTC
CAATTTTATAATATGTTTCTTTTCATGTTTCTTTTTCCTCTTTTATTTTG
TCTTTATTTTTTTTGTCACCCTACCTTTCATCTTCTTTTTCTTCTTATCT
CTTTCCTTTTTATATTTTTCTTTTTCCTCTTCTTCCTGATTATTCCTCTC
CCTCTTTTTTTCCTTN
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTAATTTGATTCAAATAATTTTAGGA
AGAAAGTTTAAGGAGATGGTTTTAGTTGTTTTGCCAGAAAGATGTAGTAC
AGTTAGAATCAAGAATAGGATGAGGCCCTCCTCATAGAATATTAAGTAAA
GGCCTAACAATAAGGAATACAATGAGCTTTCATAAATGCACTAAGAAGAG
AAATAGGCTTGGGACAGATTTGTGATCAAGGAAAAACATTCATTCTTGTC
CAGTCCAAGGATGAGGTCTCTGGTGTGCACTGTGATAAAGCAAGGCCATG
TGAAACTGTTGCTTTGAACTTATAATGAGCTTATGGAATGAAACCCTGCT
TTGAACTTACTATCGACATCCTTCTGTAACTCCCCCTTTGTGTACTATTT
TATCTGTGAGGCACTTTTATAAAGAATTTTTATATAAGAAAGGTATACAA
AGGTTGAAAGAAAAAATAATGCGTGGGCTGTTGGAACTTTGGTTCCCCCT
AACCAAGTGGCTTGGGTTATATTTTCGTCCTTCGCCTCTTTTTTTTTCTC
CGTGTGTTCTCTATTTATTTTCTTTGTCCTTCTTCCGTTCCTATCCCCTG
GTGGTCGCTCGTCTTCTCCCCTTTTTCTCTCTTGTCCGTATTATCCACAT
GTTACTTTTTCCACTTTTTTTATTATACTCTCTATCGTTCCTTATCTTTA
CCTCTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_l10.b1 MSMg01no461_l10.b1 CHROMAT_FILE:
MSMg01no461_l10.b1 PHD_FILE: MSMg01no461_l10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:25 2005
         (441 letters)



>mm_chr11_87040156_87040996
          Length = 841

 Score =  687 bits (355), Expect = 0.0
 Identities = 396/415 (95%), Gaps = 10/415 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctctgttctcaagtgagtgacgttatgatttacaaacccactctacagatcac 64
           ||||||||||||   | ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 424 gaattctctctggagtgaagtgagtgacgttacgatttacaaacccactctacagatcac 365

                                                                       
Query: 65  ttttgagttgagttgtaatcataagtgatccttatttttatttattaaaactgtttattc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ttttgagttgagttgtaatcataagtgatccttatttttatttattaaaactgtttattc 305

                                                                       
Query: 125 aggtaaggagtatgttgaaattttgccaatatcttaataaaactcagcaattaaaaacca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 aggtaaggagtatgttgaaattttgccaatatcttaataaaactcagcaattaaaaacca 245

                                                                       
Query: 185 ctggttatttgtcttattcttagaggaaagctgagtcagttgtaaattaggcaggtcttt 244
           | ||||||||||||||||||||||||| ||||||||||||||||||        ||||||
Sbjct: 244 ccggttatttgtcttattcttagaggacagctgagtcagttgtaaa--------gtcttt 193

                                                                       
Query: 245 cagtcaaacacgccccctccaccagcctgtctctagagtgttgggattaagggcatatgc 304
           ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 192 cagtcaaacacgccccctccaccagcctgcctctagaatgttgggattaagggcatatgc 133

                                                                       
Query: 305 caccactgcaaagggtagatttcttataccttatgaacactgaaaactgcaaatcttcta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 caccactgcaaagggtagatttcttataccttatgaacactgaaaactgcaaatcttcta 73

                                                                  
Query: 365 agtgctgctttaactattatcatccacccccc--aaaaaaacccaaaaaacaaaa 417
           ||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 72  agtgctgctttaactattatcatccacccccccaaaaaaaacccaaaaaacaaaa 18


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)