BAC Information

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BAC

Clone NameMSMg01-461O17
Chromosome11 (Build37)
Map Location 57,591,738 - 57,592,141
singlet/doubletsinglet
Overlap geneGalnt10
Upstream geneGria1, LOC667878, 1810073G14Rik, Mfap3
Downstream geneSap30l, Hand1, LOC624605, Larp1, LOC676527, LOC667947, Cnot8, Gemin5, Mrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461O17.T7 (MSMg01no461_o17.b1)MSMg01-461O17.TJ (MSMg01no461_o17.g1)
ACCAG546928AG546929
length788849
length of high quality
(start - end)
397 (72 - 468)86 (66 - 151)
definitionCHROMAT_FILE: MSMg01no461_o17.b1 PHD_FILE: MSMg01no461_o17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:42 2005CHROMAT_FILE: MSMg01no461_o17.g1 PHD_FILE: MSMg01no461_o17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAAATCCGCGGAA
TTCCTCAGGGAGTGCCACGACATCTGGGAAGATGTCTTATCTGGAACCCA
GCTCCCCTGTTAAGGGGCTGTCCACAGAGCAGCGGGTCTGGAAGCTGTCA
TTAGAGACATTCACCACTAGAGGGCTCTGCTGCCCTGCCTTCTAGGCCAC
TTCCGGCTCAGCAGTATTTGATGTTGAGAAAATGAATGTCTCTCTGAGGG
GGAACCGCTGGGAACTCAGGCTAGAGGGTCCCCCAAGGTTATTTTTGGGG
TGTGTGGTTGCACTCTGGTCTTTCTAGTATCTCAAACAGCACCGTGTCTT
TTCAGAGGCGTCCCTTACCTTTGAGGTTCCCTTTATTTAATTTATTTCCA
ATAAATTTTATTTCCCCAGCAAACGAACCCCATACTCCCAAATCTTGCTA
ATGATTATCCCTTGAAGCCAGTAGTCCACTTCAACCCCTGATATGGTTTT
CAGGTCAATCCACGTTTTACTTGTTTTGTTCTGAGTTTTGAGTAATTACT
ACCTTCTCCTTTCCTCCTTCCTCCCCTTTTTTCACTCCACTTCCGCTTAC
TCCCTTTCTCTATCCTCCCTCCTTCTTGTAGTTCCGTTCTCGTCCCCTTT
TTAATAACCCCCGCATTTCTNTTTTTTCCCTTTTCTATATATTCTCTAAT
TTATCCACACCCCCCCTTTAAACTTTCTTGGTTACTTTTTTTTCACCCCT
CTTCTGTTCTTCTTTTTGTTTTCTCACCGTTATCACGT
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCTATCATCGACTTCATAAGCTCGAATGGGAGGTC
AGGNAGATGGCTACCACTGATGAGGNTTATTATATGAACTTTGTTCCTGA
TGCTTACACANCATTTCCCAGCCCCAGGATGGTTTTCTCAGGGGCACTCT
TGGGAGAGAACCATGCTCAACCCGGNATATCCGAAAGGGGGCGTAGGTTA
GGGGCGGGGGGGGGGGCGGGGGGGGGGTTAAAAGNAAAACTTTTAAAAAG
GGGCGGGGCNNNNNTTTTTTTCTTAAAGGGTGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGNCNTCTTCT
NAAAAAAANNTNCNNNAATANNCAAAAAATTAATAGGAGAGGGGGCTCCC
CNNAANNNNNATAAAAAAAAAAAAAAAAAAAAGGGGGGGGGGGGGTTCCA
ANAAANTTGTTAATAATGGGGGGGGGCTNNNNNAAAAAAAAAANTTTTTT
ATAAGAGGGGGGGGGGGGGCTTNAAAAAAAANNNNNNNNNAANNNAAAAA
AAAAAAAAAAANATTAAAATAAATTAATGATANNNAATCAAAANAAAAAN
ANAAAAANAANNAANAAAANAAAAAANNANNAAAAAAAATTAATTTTTTG
GTTTTGTGTTGTTTTTGGTGGTCCTCTCCTNNNNNNNNNNNNNNNNNNNT
NNNNNTAANANANNATAAAAAAATAANANTTATTNTTTATAAAAAAAAAA
NANANTTAAAAAAATTTTAATATTTTTTTTATGTTTTATTTTTTGTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_o17.b1 MSMg01no461_o17.b1 CHROMAT_FILE:
MSMg01no461_o17.b1 PHD_FILE: MSMg01no461_o17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:42 2005
         (397 letters)



>mm_chr11_57591538_57592342
          Length = 805

 Score =  611 bits (316), Expect = e-179
 Identities = 380/404 (94%), Gaps = 8/404 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctgggaagatgtcttatctggaacccagctcccctgttaaggggctgtccacagagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 atctgggaagatgtcttatctggaacccagctcccctgttaaggggctgtccacagagca 545

                                                                       
Query: 61  gcgggtctggaagctgtcattagagacattcaccactagagggctctgctgccctgcctt 120
           || || ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 544 gcaggcctggaggctgtcattagagtcattcaccactagagggctctgctgccctgcctt 485

                                                                       
Query: 121 ctaggcca-cttccggctcagcagtatttgatgttgag-aaaatgaatg----t--ctct 172
           ||||||||  ||||||||||||||||||||| |||||| ||||||||||    |  ||||
Sbjct: 484 ctaggccatgttccggctcagcagtatttgaagttgagaaaaatgaatgaaaatggctct 425

                                                                       
Query: 173 ctgagggggaaccgctgggaactcaggctagagggtcccccaaggttatttttggggtgt 232
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 424 ctgagggggaaccgctgggaactcaggccagagggtcccccaaggttatttttggggtgt 365

                                                                       
Query: 233 gtggttgcactctggtctttctagtatctcaaacagcaccgtgtcttttcagaggcgtcc 292
           |||| |||||||||| || |||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 364 gtggctgcactctggcctctctagtatctcaaacatcaccgtgtcttttcagaagcgtcc 305

                                                                       
Query: 293 cttacctttgaggttccctttatttaatttatttccaataaattttatttccccagcaaa 352
           ||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 304 cttagttttgaggttccctttatttaatttatttccaataaattttatttccccagtaaa 245

                                                       
Query: 353 cgaaccccatactcccaaatcttgctaatgattatcccttgaag 396
           |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 244 cgaaccccatactccctaatcttgctaatgattatcccttgaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 805
Length adjustment: 9
Effective length of query: 388
Effective length of database: 796
Effective search space:   308848
Effective search space used:   308848
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)