Query= MSMg01no463_a05.b1 MSMg01no463_a05.b1 CHROMAT_FILE:
MSMg01no463_a05.b1 PHD_FILE: MSMg01no463_a05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:14 2005
(244 letters)
>mm_chr11_83938933_83939576
Length = 644
Score = 398 bits (206), Expect = e-115
Identities = 232/248 (93%), Gaps = 13/248 (5%)
Strand = Plus / Minus
Query: 1 tttcaaggtcagaa----tctttttttttctgccaagttcagattcttaaatgagtctct 56
|||||||||||||| | |||||||||| ||||||||| |||||||||||||||||||
Sbjct: 347 tttcaaggtcagaatttttttttttttttccgccaagttctgattcttaaatgagtctct 288
Query: 57 cagcctcgtcgtcccagtacttaggactctaggaacgcaccactcactgttcctggcttt 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 cagcctcgtcgtcccagtacttaggactctaggaacgcaccactcactgttcctggcttt 228
Query: 117 gttttgttctgtttggcttttttgaggcagggtcttattgtatagccctggttggcatag 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 gttttgttctgtttggcttttttgaggcagggtcttattgtatagccctggttggcatag 168
Query: 177 aacttgatctgtagcttaggcaggtcttgaaggtctccctaagctcccccaggatttaca 236
|||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 167 aacttgatctgtagcttaggcaggtcttgaaggt---------ctcccccaggatttaca 117
Query: 237 agtgtggt 244
||||||||
Sbjct: 116 agtgtggt 109
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no463_a05.g1 MSMg01no463_a05.g1 CHROMAT_FILE:
MSMg01no463_a05.g1 PHD_FILE: MSMg01no463_a05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:14 2005
(474 letters)
>mm_chr11_83760660_83761533
Length = 874
Score = 855 bits (442), Expect = 0.0
Identities = 466/474 (98%)
Strand = Plus / Plus
Query: 1 ccagggctacatagagaaactctgtctacaaaaacaaagaaccaaatgggcagtgaaaag 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagggctacatagaaaaactctgtctacaaaaacaaagaaccaaatgggcagtgaaaag 260
Query: 61 ttccctacctccctctctcctcccttccttttctcccttcctcctttctctcttcttccc 120
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 261 ttccctacctccctctctcctccctttcttttctcccttccccctttctctcttcttccc 320
Query: 121 tcttcccatttacaaaataatcaacttggccttcagttaaggtagaggaaaaatatgagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttcccatttacaaaataatcaacttggccttcagttaaggtagaggaaaaatatgagt 380
Query: 181 tatctttttaccccattatagtagttttttactttgtgtactgaaatgagaatatacgca 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 tatctttttaccccattatattagttttttactttgtgtactgaaatgagaatatactca 440
Query: 241 taggtttgagtgattttattaaccacatttattgaatttgcatttactttcctcttaggt 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 taggtttgagtgattttattaaccacatttattgaatttgcatttactttcctcttgggt 500
Query: 301 tatttctaccatttcagcttaggctttacaaattacagtgacccctttgaagagtgttat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatttctaccatttcagcttaggctttacaaattacagtgacccctttgaagagtgttat 560
Query: 361 aatcttgtcacctaggttgtcaccactgtttaattctaaccttcactcactatgttattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatcttgtcacctaggttgtcaccactgtttaattctaaccttcactcactatgttattt 620
Query: 421 aataaattcatcccaaggggattgaagggtacagatacttgggcaagggtcagt 474
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 621 aataaattcatcccaaggggattgaagggtacagatactcgggtaagggtcagt 674
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space: 400896
Effective search space used: 400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
