Query= MSMg01no463_e08.b1 MSMg01no463_e08.b1 CHROMAT_FILE:
MSMg01no463_e08.b1 PHD_FILE: MSMg01no463_e08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:36 2005
(245 letters)
>mm_chr11_116920950_116921594
Length = 645
Score = 433 bits (224), Expect = e-126
Identities = 241/252 (95%), Gaps = 9/252 (3%)
Strand = Plus / Plus
Query: 1 cagagaaaccctgcttcgaaacc---------aaaaaaaaaaaaaaattattttatagcc 51
||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 192 cagagaaaccctgcttcgaaaccaaaaaaaaaaaaaaaaaaaaaaaattattttatagcc 251
Query: 52 cctgtttctaaatgaggtcacacacagttcagggtcctagcagtcaggactccaacctat 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 cctgtttctaaatgaggtcacacacagttcagggtcctagcagtcaggactccaacctat 311
Query: 112 gcacgttgagtaggagcggacacattagcttataccgttagtgacatcttttccctaaag 171
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gcatgttgagtaggagcggacacattagcttataccgttagtgacatcttttccctaaag 371
Query: 172 ccagaaggtgttgttggagctgcctccctctgtcactgcacaaggctctctggaaccacc 231
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ccagaaggtgctgttggagctgcctccctctgtcactgcacaaggctctctggaaccacc 431
Query: 232 gaactgggagaa 243
||||||||||||
Sbjct: 432 gaactgggagaa 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no463_e08.g1 MSMg01no463_e08.g1 CHROMAT_FILE:
MSMg01no463_e08.g1 PHD_FILE: MSMg01no463_e08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:36 2005
(467 letters)
>mm_chr11_117058310_117059177
Length = 868
Score = 746 bits (386), Expect = 0.0
Identities = 432/448 (96%), Gaps = 3/448 (0%)
Strand = Plus / Minus
Query: 1 actcttgtcaaccaggctggcataagactcaggaatcctcctgcctctgcctcccaagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 actcttgtcaaccaggctggcataagactcaggaatcctcctgcctctgcctcccaagtg 659
Query: 61 ctgggattgaaggcctcaccacggctgcctggctcccattttgagtttttcaaatggaca 120
||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 658 ctgggattgaaggcctcgccacggctgcctggctcccgtttggagtttttcaaatggaca 599
Query: 121 gttttttaaaaacagggaacgtagtcactgtgtgggtgagtgcaggatagctaatgttac 180
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttttttttaaaacagggaacgtagtcactgtgtgggtgagtgcaggatagctaatgttac 539
Query: 181 ccatgggggcagcccacacaccactatagtccttcactgaacagactgccgggccgccca 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 538 ccatgggggcagcccacacaccactacagtccttcactgaacagactgccgggccgccca 479
Query: 241 ttttttata-tgtcctctgagcattcagctcctccacctgcagagtggttcttgaccact 299
||||||| | ||||| |||||||| |||||||||||||||| ||||||||||||||| ||
Sbjct: 478 ttttttagactgtccactgagcatccagctcctccacctgccgagtggttcttgaccgct 419
Query: 300 tgcctgctttcctcgtgagccagggtttgctgtgataagtgaggatcaggacatttccca 359
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 418 tgcctgctttcctcgtgagcaagggtttgctgtgataaatgaggatcaggacatttccca 359
Query: 360 catcttgccaggctgagctcatggttagtaagtaatattaagactgggggcgaacaaaca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 catcttgccaggctgagctcatggttagtaagtaatattaagactgggggcgaacaaaca 299
Query: 420 ctcaggcagaggcagaggc--aggcaga 445
||||||||||||||||||| |||||||
Sbjct: 298 ctcaggcagaggcagaggcagaggcaga 271
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 868
Length adjustment: 10
Effective length of query: 457
Effective length of database: 858
Effective search space: 392106
Effective search space used: 392106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
