Query= MSMg01no463_k19.b1 MSMg01no463_k19.b1 CHROMAT_FILE:
MSMg01no463_k19.b1 PHD_FILE: MSMg01no463_k19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:11 2005
(528 letters)
>mm_chr11_85956728_85957655
Length = 928
Score = 857 bits (443), Expect = 0.0
Identities = 471/487 (96%), Gaps = 13/487 (2%)
Strand = Plus / Minus
Query: 50 tgtttctctaaactatttaaattttacttatcaggtctgggtgtggctcattagagtccc 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 tgtttctctaaactatttaaattttacttatcaggtctgggtgtggctcattagagtccc 869
Query: 110 tgcc---tagtagtctttttgttgttagtcagttttgtttttgagaaagtttttctgtgt 166
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 tgcctagtagtagtctttttgttgttagtcagttttgtttttgagaaagtttttctgtgt 809
Query: 167 agtcttggctataaaccaggctggcttcaaattcatagaaatccacctgcctctgtctcc 226
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 808 agtcttggctataaaccaggctggcttcgaattcatagaaatccacctgcctctgtctcc 749
Query: 227 tgggtgctgggatga-----ttttttctcaataccatgccctgctcttactactgttctt 281
||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 748 tgggtgctgggatgaaaggc-----tctcaataccatgccctgctcttactactgttctt 694
Query: 282 gaagacctgggttcatctaccaaaataatagcaagaaagatgaatattagtaaaatatgt 341
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 693 gaagacctgggttcatctaccaaaataatagcaagaaaaatgaatattagtaaaatatgt 634
Query: 342 ttatcatatgatagcctcattaccagagttacttcctatatataattcaggcatttaggg 401
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 633 ttatcatatgatagcctcattaccagacttacttcctatatataattcaggcatttaggg 574
Query: 402 aaaaaaaaactttattcaaatccattggtacttttaaattttagttcattgcttctgaaa 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 aaaaaaaaactttattcaaatccattggtacttttaaattttagttcattgcttctgaaa 514
Query: 462 ggtactaaagagcatgctagttgcctgaagaagttattctcctaaatgtctttattaaag 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ggtactaaagagcatgctagttgcctgaagaagttattctcctaaatgtctttattaaag 454
Query: 522 tgtctgg 528
|||||||
Sbjct: 453 tgtctgg 447
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space: 475524
Effective search space used: 475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no463_k19.g1 MSMg01no463_k19.g1 CHROMAT_FILE:
MSMg01no463_k19.g1 PHD_FILE: MSMg01no463_k19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:11 2005
(492 letters)
>mm_chr11_85756598_85757488
Length = 891
Score = 903 bits (467), Expect = 0.0
Identities = 487/501 (97%), Gaps = 14/501 (2%)
Strand = Plus / Plus
Query: 1 agaaaataagctcccctcaccccccggcctccagcttttttttttttt-----ctattct 55
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 196 agaaaataagctcccctcaccccccggcctccagcttttttttttttttttttctattct 255
Query: 56 aaggattaaattcattcagagcctcccacatgctaagtgaatggtctctctctgagctac 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 aaggattaaattcattcagagcctcccacatgctaagtgaatggtctctctctgagctac 315
Query: 116 ataccaggtcagtgtattagtttgaaaaagaaattatatctagtttttctgagcttcatt 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ataccaggtcagtgtattagtttgaaaaagaaattatatctagtttttctgagcttcatt 375
Query: 176 tcttttatgttttctcaaatgttagttttagagattacctttctctctgaggttatctta 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tcttttatgttttctcaaatgttagttttagagattacctttctctctgaggttatctta 435
Query: 236 gaaatcctttag----ttttttggtcagaatgtaactggagaataacagtgtttgtgtgc 291
|||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gaaatcctttaggccat-----ggtcagaatgtaactggagaataacagtgtttgtgtgc 490
Query: 292 tggaatctcaaaggaagacatggagtcattcgggggtcatcatgtcttctgtaacatgga 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tggaatctcaaaggaagacatggagtcattcgggggtcatcatgtcttctgtaacatgga 550
Query: 352 gaattttgtacattgctacagaaattggaaattgtctttgttttctcatgtgtattcatt 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gaattttgtacattgctacagaaattggaaattgtctttgttttctcatgtgtattcatt 610
Query: 412 ttcattgctaccttgtatattcattttcattgccgccttttctccctcctcccatctccc 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ttcattgctaccttgtatattcattttcattgccgccttttctccctcctcccatctccc 670
Query: 472 tgctcccctgacacgaggcag 492
|||||||||||||||||||||
Sbjct: 671 tgctcccctgacacgaggcag 691
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 891
Length adjustment: 10
Effective length of query: 482
Effective length of database: 881
Effective search space: 424642
Effective search space used: 424642
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
