BAC Information

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BAC

Clone NameMSMg01-463P14
Chromosome11 (Build37)
Map Location 110,799,556 - 110,799,753
singlet/doubletsinglet
Overlap genenone
Upstream geneAbca8b, Abca8a, Abca9, Abca6, Abca5, Map2k6, LOC100041523
Downstream geneKcnj16, Kcnj2, LOC667003, LOC100041539, LOC100041559, EG629966, LOC629967
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463P14.T7 (MSMg01no463_p14.b1)MSMg01-463P14.TJ (MSMg01no463_p14.g1)
ACCAG548500AG548501
length730734
length of high quality
(start - end)
198 (334 - 531)425 (80 - 504)
definitionCHROMAT_FILE: MSMg01no463_p14.b1 PHD_FILE: MSMg01no463_p14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:35 2005CHROMAT_FILE: MSMg01no463_p14.g1 PHD_FILE: MSMg01no463_p14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAAACATCTATXXXXXXXXXXXXXXXXXXXXXXXXXNATTCCAAGACAC
GCGCGGATTCACGATTCTTTCTTTTCTTTTCCATTCTCTATTCCTTCATC
TTCCTTCCATAACTATTCTGTTTTTATATTTCATGTACTAGAGACATATA
TCCTTGCAGTAAGAATACCCTCAGATATTTTTTCATGGCCACAGAGAATT
AAGAGTACAATATGAGTTACATAACTAGGAGACTCAAGGAGAAAGAGGAA
GGTGATTATAGTGGTAGAAATGCCTTCACATTTAGAGCTGAGAGAACAGA
ACTGGTGTAGAAGAAAATGCTGTTANATTTGTCAGGACAGAGGACAAAGG
TTAAGAGATAAGACCTACGAACAAGATCTTAAGTATGGGCAGATGCAAGC
ATCTACAGAAGAGTAGCAACAAGTCCTTGGATAGGATGGGAACGGTATGT
AAACCTGCATCTTCCTGGATACAGAGGCTAGTCTCTGCAGAAGATCTGAG
ACCAAGAGCCACCAGAGCTGTTGTGAGACTGGAGCAAGAGACACATTGCT
ACAACACTGACATGGGCAGTGCACTTTTCCAAGGTAGTTTTCTTTGGCTA
TGCACAGGAACCTGGAAACGGATGTAGAGACCAGTTCAAAGTGCACATTT
TCAGGACTTCACTATGTTAGAGGAGCAGGGGTAGGGAAGGAGAATAGGGG
GGGGGCCTCAGTGTCCTCTTCATCCCGCTG
ACCCCCCTATGATGTGGGAGGCCTGGNGGNCGCCTGGTTTCACACCCGAG
GNGAACTATAGAAGGTTTCGCAAAACTCCTGATCTTTCCAAGACTTTTAT
CATGAATGGGTGTTGGATCTTGTCAAATGCTTTCTCTGCATCTAAGGAGA
TGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATACTGGATTACGTTG
ATGGATTTCCGTATATTGAACCATCCCTGCATCCCTGGGATGAAACCTAC
TTGGTCAGGATGGATGATTGTTTTGATGTGTTCTTGGATTCGGTTAGCAA
GAACTTTATTGAGGATTTTTGCTTTTTTATTCATAAGGGAAATTGGTCTG
AATTTCTCTATCTTTGTTGGGTCTTTTTGTGGTTTAGGTATCAGAGTAAT
TGTGGCTTCATAGAATGAATTGGGTAGAGTACCTTCTGTTTCTATTTTGT
GGACTAGTTTGTGAAGAACTGGGATTAGATCTTCTTTGAAGGTCTGATAG
AACTCTGCACTATACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAGACT
ATTACTGACTGCTTCTATTTTTTTAGGGGATATAGGACTGTTTTATATTA
TTACCCTGATCCTGATTTACTTTTGTTACCTTGCTATCTGTCTAATAAAC
TTGTCTTTTTCATCCCTGTCTTTCCCATTTTTATTGGAGTATATCCCTTT
TGTACATCTGATCTTACCACATGTTTGTTCGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_p14.b1 MSMg01no463_p14.b1 CHROMAT_FILE:
MSMg01no463_p14.b1 PHD_FILE: MSMg01no463_p14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:35 2005
         (198 letters)



>mm_chr11_110799356_110799953
          Length = 598

 Score =  368 bits (190), Expect = e-106
 Identities = 196/198 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggacagaggacaaaggttaagagataagacctacgaacaagatcttaagtatgggcaga 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 398 aggacagaggacaaaggttaagagataagacctacaaacaagatcttaagtatgggcaga 339

                                                                       
Query: 61  tgcaagcatctacagaagagtagcaacaagtccttggataggatgggaacggtatgtaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tgcaagcatctacagaagagtagcaacaagtccttggataggatgggaacggtatgtaaa 279

                                                                       
Query: 121 cctgcatcttcctggatacagaggctagtctctgcagaagatctgagaccaagagccacc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 278 cctgcatcttcctggatacagaggctagtctctgcagaagatctgagaccgagagccacc 219

                             
Query: 181 agagctgttgtgagactg 198
           ||||||||||||||||||
Sbjct: 218 agagctgttgtgagactg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 598
Length adjustment: 8
Effective length of query: 190
Effective length of database: 590
Effective search space:   112100
Effective search space used:   112100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)