BAC Information

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BAC

Clone NameMSMg01-464B22
Chromosome11 (Build37)
Map Location 15,807,395 - 15,807,645
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC432537
Downstream geneLOC665660, Vstm2, Sec61g, Akt2-ps, LOC665689, LOC627583, Egfr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464B22.T7 (MSMg01no464_b22.b1)MSMg01-464B22.TJ (MSMg01no464_b22.g1)
ACCAG548611AG548612
length768766
length of high quality
(start - end)
249 (70 - 318)487 (149 - 635)
definitionCHROMAT_FILE: MSMg01no464_b22.b1 PHD_FILE: MSMg01no464_b22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:46 2005CHROMAT_FILE: MSMg01no464_b22.g1 PHD_FILE: MSMg01no464_b22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGACTCATATCGCTGATTTTTAGAANAGAGATTTAAAAGCACAGTAGT
ATATGGAACATTTTGAAACGCAAATAGGTAAGTGTTGCATGTGCTCATTC
TTCTAATTATTGACACATTCATTCATTCATTATTCATTCTTAGCTGTGGA
AAACTAGAAAATCAGCAAGATTGAGTTAAGGTTATGCATGGTTAATATAA
TCATCTGTAGTGAATAGATGTCCTAGAAAAAAATGTGATTAGGTCTAGGT
ACCACCAGTGTTTAGTAATGTTTTGAAGTCCTGGATATAAATGAATTTGC
CTGCAGCAATATAGAAATCAAAGTGAAGAAAGACTATAACTGAGCATCAA
AGAATTCTAGTGATCTAAAAAAGAAACTTAAAATAGTACAAAAAGGACAC
ACAGGAAATGTTACTATGGAAGTTACTGAAAGGCAGAGAATATAATTTTT
TATATGTAGGGGAGTGGGGAGGAGGGTATGCNCCTTCTCCTTCCCCTTTC
TCTTCCTTCTTTTTCTTTTTCCCCTCCCTCTTTTTTTTTTCCCCCTTCCT
TTTTTCCTCTTTTTCCCCCCCTTTCCCCCCCCCTTCTTCCTTTTTCTTTC
CTTTTTCTTTTTTTTTTCCCCCCCTTTCTCCCCTTTCCTTTTCCCCCTCT
TCTCCTTTTTCCCCCTTTTTTTCTCCCCCCCTCCTTCCTTTCCCCTTTCT
TTCCCCTCCTCTTTTCCT
TATAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTGAAGATACTGAATGGCAGGGAAGAA
CCTGAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCANAAT
AACCCTAAGATTACACCTCACACCAGTCAGAATGGGTAAGATCAAAATTC
AGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCC
TTTTTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGG
CGGTTCCTCTGAAAATTGTACATAGTACTACTGGAGGATCCCGCAATACC
TCTCCTGGGCATATATCCAGAAGATGTTCCAACCGTTAAGAAGGACACAT
GCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAA
AAACCCAGATGCCCCTCAACGGAAGAATGGATACAGAAAATGTGGCACAT
CTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAAT
TCCTAGCCAAATGTTTGGATCTGGAGGGCATAATCCTGAGTGAGGTAACC
CAGTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTA
GCCCAGACACTTAGGATACCCAAGATATAAGACACTATTTGCTAAATGCA
TGAAACTCCCGGAATTAGGATGACCACAGTGTGGACACTTTGCCCCTTTC
TTAGTAATTTGAACAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_b22.b1 MSMg01no464_b22.b1 CHROMAT_FILE:
MSMg01no464_b22.b1 PHD_FILE: MSMg01no464_b22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:46 2005
         (249 letters)



>mm_chr11_15807195_15807845
          Length = 651

 Score =  443 bits (229), Expect = e-129
 Identities = 245/252 (97%), Gaps = 4/252 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttagaanagagatttaaaagcacagtagtatatggaacattttgaaacgcaaataggt 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttagaaaagagatttaaaagcacagtagtatatggaacattttgaaacgcaaataggt 260

                                                                       
Query: 61  aagtgttgcatgtgctcattcttctaattattgacacattcattcattcattattcattc 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtgttgcatgtgcacattcttctaattattgacacattcattcattcattattcattc 320

                                                                       
Query: 121 ttagctgtggaaaactagaaaatcag---caagattgagttaaggttatgcatggttaat 177
           ||||||||||||||||||||||||||   |||||||||||||||||||||||| ||||||
Sbjct: 321 ttagctgtggaaaactagaaaatcagtagcaagattgagttaaggttatgcatagttaat 380

                                                                       
Query: 178 ataatcatctgtagtgaatagatgtcctagaaaaaaatgtgattaggtctaggtaccacc 237
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 ataatcatctgtagtgaatagatgtcctagaaaaaa-tgtgattaggtctaggtaccacc 439

                       
Query: 238 agtgtttagtaa 249
           ||||||||||||
Sbjct: 440 agtgtttagtaa 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 651
Length adjustment: 9
Effective length of query: 240
Effective length of database: 642
Effective search space:   154080
Effective search space used:   154080
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)