BAC Information

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BAC

Clone NameMSMg01-465I04
Chromosome11 (Build37)
Map Location 3,310,647 - 3,311,079
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC236604, Sfi1, LOC623257, Eif4enif1, Drg1, Patz1, Pik3ip1, Limk2
Downstream geneRnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465I04.T7 (MSMg01no465_i04.b1)MSMg01-465I04.TJ (MSMg01no465_i04.g1)
ACCAG549673AG549674
length730734
length of high quality
(start - end)
474 (64 - 537)433 (69 - 501)
definitionCHROMAT_FILE: MSMg01no465_i04.b1 PHD_FILE: MSMg01no465_i04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:38 2005CHROMAT_FILE: MSMg01no465_i04.g1 PHD_FILE: MSMg01no465_i04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATTGTTTCCCTTCACATTCCTCAGGACCCGGCCCAGACTCTGCAAGTGG
TAGACGCTCATATTTAACAATAAAAAACAATGGGCAGGGGAGATGGCTTA
GCTGCCAGGCAAGCATAAGAACCTGAGTTCAGAAAGCCACACCCACATAA
AAAGCCAGGTGTGGTTGGTGACCCCAGCTGGGGACAGGGATGGCTGATAG
GCAGATCTCTGGAACTCACTGGTCAGCCAGCCTAGCCTAGTAGATAAGCT
TTGGGGTTTAACGAGAGACATTTGCTCACCCGTGTTCCTTGCTGCTCCAT
TGATGATAGCCAGAAGCTGGAACCAGCCTAACCATCCCTCATCAGATGGC
TACCTAGTGGAAAGGATGTACGCTCACACAATTGAACATTGTTCAGCTGT
TAAAGAAAACAAGATTAGGAAATTTGGAGATAGGAAAAAAAAAATAATCC
TGAGTCAGGGAACCCAGACCCACAAAACAAATGTCGTATGTGTTGTCTTC
CATGTGGATGTATGTGTGCTACAATTCAAATAACCACAGAGCTTAGGTGC
CTGGTAAAGGACCAGGCGGGAGGAGAGGATCTTCCAGGGGAAAGAGAAAT
ATATTAATGGTGTGGAGAGACCAAGAAAAACTTAAACACGAGCTAGGAAG
GAAAGAAATGGAAATAATGGTTTCGTCGCC
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTGGGGCTCTTCTGACAAGCTACTTAATGATT
AGCAGAGAGAGGCCCTGCTGTATTTTCCCGGGCACAGAGGGATGGGGACT
GGCTTGCTTGCTTCCTGTCCCTCCCTCCACAACTGAGCACCACATCTGTC
CTTCTCCCACTTTTTGCTGACTGCCTTTTCTTCCCACCCTGTCTCTCTTA
TAATCACTGTTTAAAGGGCAGTATGTGTAATTTGTTTCTGTTTTTTAAGA
TTTATTTATTTATGTAATGTATATGAGAACACTATTGCTGCCTCAGACAC
ATCAAAAGAGGGCACCAGATCCCATTACAGATGGTTGTGAGCTACCATGT
GGTTGCTGGGAATTGAACTCAGGACTCCTAGAAGAGCAGCCAGTGCTCTT
AACCACTGGGCCATTTCTCCAGTACCATGTAGGTTTTTATTTGTTTGTTA
GCTTGTTTTGCTTTTTTAATCACAACCTTGCNNTTCCTCGTTCAATCTCC
TGTATGTTTTAATATATTGCCCCACTCCCCCGCTCTTCTACTTTTTACTA
TTTTATTTCCCTACTTCCTCCCGAGTGAATCAAATACCAAATTACACTTC
CTCTCCTCCCCCCCACCCGCCTTATCTTTTATTTTTTTACACACCCCTTT
TCCCTTCTCGTTTCCTTTCAATTCAACACTATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_i04.g1 MSMg01no465_i04.g1 CHROMAT_FILE:
MSMg01no465_i04.g1 PHD_FILE: MSMg01no465_i04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:38 2005
         (433 letters)



>mm_chr11_3310447_3311279
          Length = 833

 Score =  822 bits (425), Expect = 0.0
 Identities = 431/433 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggggctcttctgacaagctacttaatgattagcagagagaggccctgctgtattttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggggctcttctgacaagctacttaatgattagcagagagaggccctgctgtattttcc 260

                                                                       
Query: 61  cgggcacagagggatggggactggcttgcttgcttcctgtccctccctccacaactgagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgggcacagagggatggggactggcttgcttgcttcctgtccctccctccacaactgagc 320

                                                                       
Query: 121 accacatctgtccttctcccactttttgctgactgccttttcttcccaccctgtctctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accacatctgtccttctcccactttttgctgactgccttttcttcccaccctgtctctct 380

                                                                       
Query: 181 tataatcactgtttaaagggcagtatgtgtaatttgtttctgttttttaagatttattta 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 tataatcactgtttaaagggcagtatgtgtaatttgtatctgttttttaagatttattta 440

                                                                       
Query: 241 tttatgtaatgtatatgagaacactattgctgcctcagacacatcaaaagagggcaccag 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 tttatgtaatgtatatgagaacactattgctgcctcagacacaccaaaagagggcaccag 500

                                                                       
Query: 301 atcccattacagatggttgtgagctaccatgtggttgctgggaattgaactcaggactcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcccattacagatggttgtgagctaccatgtggttgctgggaattgaactcaggactcc 560

                                                                       
Query: 361 tagaagagcagccagtgctcttaaccactgggccatttctccagtaccatgtaggttttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagaagagcagccagtgctcttaaccactgggccatttctccagtaccatgtaggttttt 620

                        
Query: 421 atttgtttgttag 433
           |||||||||||||
Sbjct: 621 atttgtttgttag 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)