BAC Information

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BAC

Clone NameMSMg01-466H05
Chromosome11 (Build37)
Map Location 13,558,644 - 13,559,054
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC627244
Downstream geneLOC432535, 1700046C09Rik, 1700054H16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466H05.T7 (MSMg01no466_h05.b1)MSMg01-466H05.TJ (MSMg01no466_h05.g1)
ACCAG550394AG550395
length753785
length of high quality
(start - end)
406 (79 - 484)235 (84 - 318)
definitionCHROMAT_FILE: MSMg01no466_h05.b1 PHD_FILE: MSMg01no466_h05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:56 2005CHROMAT_FILE: MSMg01no466_h05.g1 PHD_FILE: MSMg01no466_h05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAACTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTATTTTACGTCCAGGAAATGGTTCATTGGGTAGAAGT
GCTTACTGCTAAACCTAGCAACCAAAGTTCCATTATGATATCTACAAAGT
ACAGAGAGCCAACATTTTTAAATTTTCCTATGATCCCTGCTTGTTCACCA
TAGATTCATGAACATACGTGCACACACACACACACACACACACACACACA
CACACACACACACACACACACACATAAAAATGCACTTTTATACATCGCAA
TTAAAATCATGCTCCAAAAGCATTTCAAAGTGCTGGACCACTCCAATGTC
ATATTAACAAGTTTCTTCTTTCTTTTTGTTTGTAGTCCAGTGGCTACAGT
TTCAGTGCAGAAGGTTAGTCTCTTTAAAAGTCTAAATAGGACATACTTGA
TTATTGGTTCGAATATATCGTTCAAAATGAGGAGTACAGTTGAGAGCAGA
TAATGAGACTTAATCTAAATGACCATATCCGGAGGAAGAATTATATGATT
CACTGGCTCCCTTGTTCTAATAATTAAACCACCCTTTTGGTTGTTTTTAT
AGAACCTAACATTGGTGACAAAATATGCATTTTGCATTGCTGAAAAGCCA
TGCATCTGGTATATCCCTCATTAACCCCTTTTTATTCACTTTTTAATATC
ATATTCGCTCTTCTTTTTGTTTCCAAGGGGATCCCTTTTTACTCCTTATA
CTC
CCCCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTATATGAAAACATC
CAATTACATCAGCTCCTTTTGTGGAAGATGCTTTCCATTTTTCAATGTAT
GATTTTGGCTTCTTTGTAAAAAAAAAAATCAAGTGTCTGTAGGTTTGTGG
GTTTATTTCTGGGCCTTTGACTCAATTCCCTTTACTCAACTTCCTTGATC
CACCTGTTTCTATATTGATACCATTCAGTTTTTATTAGTACTGCTCTGTA
ATACAGCTTGAAATCAGGGATTTTTATGTTCTTTTATTGGACAATATTGC
TTTAGCTATTCTGTTTTCTGCTTTTCCATATGAAGCTGAGGATTGTTCTT
AAAGGGTCTTAAGAATTTTTTTTCACCCCCCATCTAATCTGTTCCATGCT
TTTCGTTAAACATCTTTATTTATTATTTTATCTCTTCTGTGCTACCTTGA
AGAATAATCTTTTAAATTGTTGATATGATACATATTATCCTTCTCCACCC
TACCCTTCTCTTTTTTTTTCCTTTTGATTCTACCCCGCCCGTTATTTCTT
ATTATATTCGATCATCGCCCTTTCTTCTTCCCTTATGATGAGCTTTATGA
GTGTCTACTTTTTTTATTCTCTTTCCCCCTTCCTCCTTCCTTCTATAACC
TATTCTCTATCTACCTTTGATCGGTGCGTTCACTCACGTGATACGGTGTT
TATTCAGCCCCTCCTCTGTGTCTCTCCACTCACGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_h05.b1 MSMg01no466_h05.b1 CHROMAT_FILE:
MSMg01no466_h05.b1 PHD_FILE: MSMg01no466_h05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:56 2005
         (406 letters)



>mm_chr11_13558453_13559258
          Length = 806

 Score =  601 bits (311), Expect = e-176
 Identities = 382/415 (92%), Gaps = 17/415 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatggttcattgggtagaagtgcttactgctaaacctagcaaccaaagttccattatga 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 192 aaatggttcattgggtagaagtgcttactgctaaacctagcaacctaagttccattatga 251

                                                                       
Query: 61  tatctacaaagtacagagagccaacatttttaaattttcctatgatccctgcttgttcac 120
           |||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 252 tatctacaaagtgcagagagccaacattttgaagttttcctatgatccctgcttgttcac 311

                                                                       
Query: 121 catagattcatgaacatacgtgcacacacacacacacacacacacacacacacacacaca 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 312 catagattcatgaacatacgtgtacacacacacacacacacacacacacacacacacaca 371

                                                                       
Query: 181 cacacacacacacacataaaaatgcacttttatacatcgcaattaaaatcatgctccaaa 240
            | | | | | | |    ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gagagagagagaga----aaaatgcacttttatacatcgcaattaaaatcatgctccaaa 427

                                                                       
Query: 241 agcatttcaaagtgctggaccactccaatgtcata-tt------------aacaagtttc 287
           ||||||||||||||||||||||||||||||||||| ||            ||||||||||
Sbjct: 428 agcatttcaaagtgctggaccactccaatgtcatacttgtctatgcatgtaacaagtttc 487

                                                                       
Query: 288 ttctttctttttgtttgtagtccagtggctacagtttcagtgcagaaggttagtctcttt 347
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ttgtttctttttgtttgtagtccagtggctacagtttcagtgcagaaggttagtctcttt 547

                                                                  
Query: 348 aaaagtctaaataggacatacttgattattggttcgaatatatcgttcaaaatga 402
           |||||||||||||||||||||||||||||| |||| |||||||| ||||||||||
Sbjct: 548 aaaagtctaaataggacatacttgattattagttccaatatatcattcaaaatga 602


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)