BAC Information

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BAC

Clone NameMSMg01-467C21
Chromosome11 (Build37)
Map Location 105,461,452 - 105,461,849
singlet/doubletsinglet
Overlap geneTanc2
Upstream geneItgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2, Rnf190, EG666807
Downstream geneLOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467C21.T7 (MSMg01no467_c21.b1)MSMg01-467C21.TJ (MSMg01no467_c21.g1)
ACCAG550951AG550952
length757738
length of high quality
(start - end)		447 (41 - 487)405 (71 - 475)
definitionCHROMAT_FILE: MSMg01no467_c21.b1 PHD_FILE: MSMg01no467_c21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:58 2005CHROMAT_FILE: MSMg01no467_c21.g1 PHD_FILE: MSMg01no467_c21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTGATCTTCTCCAGACTTTTATCATAAATGGTGTTGGATTTTATCAAATG
CTTTCTCAGGATCTAATGACATGATTATGTGGTTTTTGTCTTTGAGTTTG
TTTATATAGTGGATTATATTGATAGATTTCCGTATATTGAACCATCCCTG
CGTCCCTGGGATGAAGCCTACTTGATCATGATGGATGATCGTTTTGATGT
GTTCATGGATTCGGTTTGCAAGAATTTTATTGAGTATTTTTGCATTGATA
TTCATAAGGGAAAATGTTCTGATGTTCTCTTTCTTTGTTGGTCTTTGTGT
GGTTTAGGTATCAGAATAATTGTGGCTTCATAGGACGAATTGGGTAGAGT
AAGTTCTGTTTCTATTGTGTGGAATAGTTTGAGGCATATTAGAGTTAGCT
CCTCTGAAGTTCTGCTAGAATTCTGCACTAAACCCATCAGGTCCTGGGCT
TTTTTTTTTTTTTTTTTTCATTGCCGGCGCCGTCTAACACTATTTTACTC
TGTTCTTTATTTTTTCTTTACTTATTTTCTTTTTTATTTTCTTTCTATTC
TATTCCTTACCTCTTTCTTCTCCTTCTGTTTTTTCTCTAACCTATTTTCT
CTTCTTTTTCCCCCATCTCCTCTTATCCCTCTCTTTATTCCTTTTTCTTC
TTTCACCCTCCTTCCCTCTTTTCTTTTCCTCTCACCTTCTCCCTTTTTTT
TCGCTTT

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGGGAACTTTTAAGAGAGTATGTAAAGGCT
AGTGCCCTGGTAGGCCCTGGTTGGTGGTTGGTAGCAGTTCAGGGGAGTTG
GGGTTTGCTAGTAGTCAAGTTCAAAGAAGAAACAGTAGGAAAGAAACAAG
GAATTCCCCACCCCCACCCCCACCCCTTTTCTTTCTATCTTGTCTAGTGC
TAAGGTGTGAAACTGGGGGGAAAAGATGGGAAAAAAGAATCTACAAAGTA
GCAAAGACCAGCTACAGTTTATGGTTATAGGATCTAAGTGAGAGTAAAAG
CCAGTGTTTCCAGACACAGCGAGAAGGTGGCAAATAGTCCCCCCAGTCTG
GTCATGTAAATGTTTTCAGCTTTTACAAACATCTGTCCTTATTTTTTGAA
TAATTGGGTTTTGCTCCCCCACCGCCCACCAGTTCTTCCCTGCCGGTGCT
CCAGGTGGACAAGTTTTGTAGCTATTCTTTTTTCCTAAGAAAACTTGATT
ACACTTGGTGAATTTCTAAAGCATTTTATTCCGTAATCCTTACCTCACCT
TGACCCTCGTAATCTTATAACGCTCTGGGTATCCGTCCTTTCTTTTTTCC
CGACAACAAATGTCTCTTTTTTTTTTCTACGGTTAACCCTCTTTACCCTC
TTTTTCGGCTCTTTTTCTTCATTACGTTCACTTTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_c21.g1 MSMg01no467_c21.g1 CHROMAT_FILE:
MSMg01no467_c21.g1 PHD_FILE: MSMg01no467_c21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:58 2005
         (405 letters)



>mm_chr11_105461245_105462049
          Length = 805

 Score =  690 bits (357), Expect = 0.0
 Identities = 390/409 (95%), Gaps = 15/409 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggaacttttaagagagtatgtaaaggctagtgccctggtaggccctggttggtggttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 tgggaacttttaagagagtatgtaaaggctagtgccctggtaggccctggttggtggttg 267

                                                                       
Query: 61  gtagcagttcaggggag----ttggggtttgctagtagtcaagttcaaagaagaaacagt 116
           |||||||||||||||||    |||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gtagcagttcaggggagttgattggggtttgctagtagtcaagttcaaagaagaaacagt 327

                                                                       
Query: 117 aggaaagaaacaaggaattccccacccccacccccaccccttttctttctatcttgtcta 176
           |||||||||||||||||||||||||||||||||||      |||||||||||||||||||
Sbjct: 328 aggaaagaaacaaggaattccccacccccaccccc------tttctttctatcttgtcta 381

                                                                       
Query: 177 gtgctaaggtgtgaaactggggggaaaagatgggaaaaaagaatctacaaagtagcaaag 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtgctaaggtgtgaaactggggggaaaagatgggaaaaaagaatctacaaagtagcaaag 441

                                                                       
Query: 237 accagctacagtttatggttataggatctaagtgagagtaaaagccagtgtttccagaca 296
           |||||||||||||||||||||||||     ||||||||| ||||||||||||||| ||||
Sbjct: 442 accagctacagtttatggttatagg-----agtgagagtgaaagccagtgtttcctgaca 496

                                                                       
Query: 297 cagcgagaaggtggcaaatagtccccccagtctggtcatgtaaatgttttcagcttttac 356
           |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 497 cagctagaaggtggcaaatactccccccagtctggtcatgtaaatgttttcagcttttac 556

                                                            
Query: 357 aaacatctgtccttattttttgaataattgggttttgctcccccaccgc 405
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aaacatctgtccttattttttgaataattgggttttgctcccccaccgc 605


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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